Plant FIBer expression Database

Lus10008224 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G44005 52 / 3e-10 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008220
[exp]
173 / 7e-58 AT5G44005 55 / 4e-11 unknown protein
Lus10003610
[exp]
160 / 2e-52 AT5G44005 59 / 1e-12 unknown protein
Lus10003608
[exp]
154 / 3e-50 AT5G44005 55 / 4e-11 unknown protein
Lus10008223
[exp]
122 / 8e-38 ND 41 / 6e-06
Lus10003609
[exp]
100 / 1e-28 AT5G44005 51 / 9e-10 unknown protein
Lus10024940
[exp]
86 / 1e-23 ND 42 / 2e-06
Lus10008222
[exp]
89 / 4e-22 AT4G12010 327 / 4e-96 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Lus10003607
[exp]
74 / 1e-18 ND 48 / 2e-08
Lus10008219
[exp]
71 / 4e-16 AT5G44005 56 / 2e-10 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G192100
[exp]
45 / 2e-07 AT5G44005 49 / 4e-09 unknown protein
Potri.002G257600
[exp]
0 / 1 ND /
PFAM info
Representative CDS sequence
>Lus10008224 pacid=23164919 polypeptide=Lus10008224 locus=Lus10008224.g ID=Lus10008224.BGIv1.0 annot-version=v1.0
ATGAGCGGGCAAAGCATGAAGAGGGTACAGTTCCAGAGGTGGGGGAAGAGAATTAGTACCTCCTTCAACAGTTCATCATCTTCTGCTGCTGCAGCTGCTG
TGGCCATTGTTGTGGGGAGGAAGAGTAAGGGTGGTCCTTTTGGTTGGTGCTGTAGCAGATCTTACGTACCAAAGAAATGGGTTAACAAGTTCAGAGCACA
GTGGAAGAAGGCAATTGGTTGGAGGAAGAGCAGCAGTTGTGTTGAGTATAGATATGATATACAGAGCTATTCCCTCAACTTTGATGATGGTGGATGTAGA
TGA
AA sequence
>Lus10008224 pacid=23164919 polypeptide=Lus10008224 locus=Lus10008224.g ID=Lus10008224.BGIv1.0 annot-version=v1.0
MSGQSMKRVQFQRWGKRISTSFNSSSSSAAAAAVAIVVGRKSKGGPFGWCCSRSYVPKKWVNKFRAQWKKAIGWRKSSSCVEYRYDIQSYSLNFDDGGCR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G44005 unknown protein Lus10008224
[exp]
0 1
AT3G10420 SPD1 SEEDLING PLASTID DEVELOPMENT 1... Lus10028811
[exp]
5.3 0.8696
AT2G24270 ALDH11A3 aldehyde dehydrogenase 11A3 (.... Lus10003640
[exp]
5.6 0.8785
AT4G14540 CCAAT NF-YB3 "nuclear factor Y, subunit B3"... Lus10022514
[exp]
8.4 0.8480
AT1G67740 YCF32, PSBY photosystem II BY (.1) Lus10006243
[exp]
14.0 0.8584
AT5G24930 CO COL4, ATCOL4 CONSTANS-like 4 (.1) Lus10026238
[exp]
18.7 0.8567
AT1G02630 Nucleoside transporter family ... Lus10030104
[exp]
20.0 0.8450
AT4G37200 HCF164 HIGH CHLOROPHYLL FLUORESCENCE ... Lus10022477
[exp]
20.1 0.8612
AT1G74470 Pyridine nucleotide-disulphide... Lus10021665
[exp]
27.9 0.8485
AT3G10420 SPD1 SEEDLING PLASTID DEVELOPMENT 1... Lus10017471
[exp]
28.7 0.8330
AT5G13770 Pentatricopeptide repeat (PPR-... Lus10035089
[exp]
28.8 0.8390

Lus10008224 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.