Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44030 657 / 0 IRX5, NWS2, CESA4 IRREGULAR XYLEM 5, cellulose synthase A4 (.1) AT5G05170 565 / 0 IXR1, CEV1, ATH-B, ATCESA3, CESA3 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) AT4G32410 562 / 0 AtCESA1, RSW1, CESA1 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) AT5G17420 540 / 0 ATCESA7, MUR10, IRX3 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) AT2G25540 536 / 0 CESA10 cellulose synthase 10 (.1) AT4G39350 527 / 3e-177 ATH-A, CESA2, ATCESA2 cellulose synthase A2 (.1) AT4G18780 482 / 7e-161 LEW2, IRX1, ATCESA8, CESA8 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) AT5G09870 462 / 3e-152 CESA5 cellulose synthase 5 (.1) AT5G64740 460 / 2e-151 PRC1, IXR2, E112, CESA6 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) AT2G21770 451 / 7e-148 CESA09, CESA9 cellulose synthase A9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012198 [exp] 570 / 0 AT5G05170 1774 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10007538 [exp] 568 / 0 AT5G05170 1772 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10039607 [exp] 551 / 0 AT5G05170 1820 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10028597 [exp] 529 / 7e-178 AT4G32410 1922 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Lus10018902 [exp] 522 / 2e-175 AT4G32410 1915 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Lus10007296 [exp] 495 / 5e-166 AT4G18780 1671 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) Lus10029245 [exp] 494 / 2e-165 AT4G18780 1659 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) Lus10006161 [exp] 466 / 1e-153 AT5G64740 1734 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10003525 [exp] 452 / 6e-153 AT5G64740 912 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G257900 [exp] 721 / 0 AT5G44030 1526 / 0.0 IRREGULAR XYLEM 5, cellulose synthase A4 (.1) Potri.006G052600 [exp] 573 / 0 AT5G05170 1749 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Potri.009G060800 [exp] 570 / 0 AT5G05170 1838 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Potri.016G054900 [exp] 570 / 0 AT5G05170 1754 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Potri.018G103900 [exp] 546 / 0 AT5G17420 1730 / 0.0 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) Potri.013G019800 [exp] 545 / 0 AT5G64740 1512 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.005G027600 [exp] 543 / 0 AT5G64740 1506 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.006G251900 [exp] 540 / 0 AT4G32410 1899 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Potri.018G029400 [exp] 538 / 0 AT4G32410 1898 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Potri.011G069600 [exp] 491 / 1e-164 AT4G18780 1658 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03552 [flax] [poplar] Cellulose_synt Cellulose synthase
Representative CDS sequence Show only first row Show all	>Lus10008225 pacid=23164898 polypeptide=Lus10008225 locus=Lus10008225.g ID=Lus10008225.BGIv1.0 annot-version=v1.0 ATGGCTGGCACTGCCATGGTTCCCCGTTCTTTCAACGCTGGTGATGATCATCATTATGATGATGATGATGATCCTGACAAGTTACAGCAGCAGCAGCGGC CTGCCACCCGCCAGTCTTCTGCTCCTCCCAAGGCGTGCAGAGTCTGTGGGGATGACATTGGGGTGAAGGAAGATGGAATCCCATTTGTGGCTTGCCATGT TTGTGGCTTTCCTGTCTGTAGGCCTTGTTATGAGTACGAGAGGAGTGACGGCAACCAGTGCTGCCCTCAGTGCAACTCTCGCTACAAGCGTCATAGAGGT TCTCCGAGAGTCCCTGGAGATAATGAGGATGACGATGTTCATGATGCTGATGATTTTGATGATGAGTTCCCGACAAAGAATCACTTGGAGGACCCGGATC GCAAAGATGTTACTGGTCATTCTGAAAATAGGGACGTTCAGCCACAGCTGCACACTGGAGGCCCTACTTTCTCTTCTCCTGGAAGTGTTGTTGGTAAGGA TTTCGAAGCAGAAAGAGAAGCTTACAGCAATGCAGAATGGACAGAACGAGTGGAGAAATGGAAGATCAGGCAGGAAAAGAGAGGTCTGGTTAGTAAAGAC GATGGAGGAAATGGTCAAGGAGAAGAAGATGAATACTTAACCGCTGATGCCAGACAACCGCTCTGGCGAAAAGTACCAATGCCCTCGAGCAGAGTGAATC CATACCGCATTGTCATTGTGCTCAGGCTGATCATTCTTTGCTTCTTTTTCCGTTTCCGAATCTTAACTCCAGCCTATGATGCTATGCCCTTGTGGGGAAT CTCTGTGGTGTGTGAGATCTGGTTTGCTTTGTCCTGGATACTTGATCAGTTCCCCAAATGGTTCCCAATTAACCGGGAAACTTATCTTGATCGTCTCTCC TTGAGGTTTGAGCGAGAGGGAGAGCCGAACAAGCTAGCCCCGGTTGATTTCTTTGTCAGTACTGTAGATCCTCTCAAGGAACCACCGATCATTACAGCAA ACACGGTTCTTTCCATCCTGGCAGTTGATTATCCGGTTGATAAGGTCAGCTGTTATGTCTCTGATGATGGTGCCTCAATGCTTCTCTTTGACGCACTGGC AGAAACTGCTGAATATGCAAGGAGGTGGGTGCCTTTTTGCAAGAAGCATAATGTTGAGCCAAGAGCTCCAGAATTCTACTTCTCTCAAAAGATTGATTAT TTGAAAGATAAGGTGCACCCGAACTTTGTGAAGGAGCGCAGAGCAATGAAGAGAGAGTATGAAGAGTTCAAGGTGAGGATTAATGCACTGGTATCTAAAG CTCAGAAGAAACCTGAAGAAGGATGGGTAATGCAGGATGGCACCCCATGGCCAGGAAACAATACCCGTGATCACCCGGGAATGATCCAGGTTTATCTTGG AAGTGAAGGTGCACTTGATGTTGAAGGAAATGAGCTCCCTCGACTTGTGTATGTTTCACGTGAGAAGAGACCAGGCTATTCCCACCACAAGAAAGCTGGT GCCATGAATGCTCTGGTGAGTAGCTAG
AA sequence Show only first row Show all	>Lus10008225 pacid=23164898 polypeptide=Lus10008225 locus=Lus10008225.g ID=Lus10008225.BGIv1.0 annot-version=v1.0 MAGTAMVPRSFNAGDDHHYDDDDDPDKLQQQQRPATRQSSAPPKACRVCGDDIGVKEDGIPFVACHVCGFPVCRPCYEYERSDGNQCCPQCNSRYKRHRG SPRVPGDNEDDDVHDADDFDDEFPTKNHLEDPDRKDVTGHSENRDVQPQLHTGGPTFSSPGSVVGKDFEAEREAYSNAEWTERVEKWKIRQEKRGLVSKD DGGNGQGEEDEYLTADARQPLWRKVPMPSSRVNPYRIVIVLRLIILCFFFRFRILTPAYDAMPLWGISVVCEIWFALSWILDQFPKWFPINRETYLDRLS LRFEREGEPNKLAPVDFFVSTVDPLKEPPIITANTVLSILAVDYPVDKVSCYVSDDGASMLLFDALAETAEYARRWVPFCKKHNVEPRAPEFYFSQKIDY LKDKVHPNFVKERRAMKREYEEFKVRINALVSKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSEGALDVEGNELPRLVYVSREKRPGYSHHKKAG AMNALVSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44030		IRX5, NWS2, CES...	IRREGULAR XYLEM 5, cellulose s...		Lus10008225 [exp]	0	1
					Lus10043485 [exp]	1.4	0.9888
					Lus10043486 [exp]	2.0	0.9815
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10034670 [exp]	3.0	0.9812
AT5G60720			Protein of unknown function, D...		Lus10021450 [exp]	3.5	0.9802
AT5G55970			RING/U-box superfamily protein...		Lus10016652 [exp]	3.5	0.9812
AT1G29890		RWA4	REDUCED WALL ACETYLATION 4, O-...		Lus10000367 [exp]	3.9	0.9806
AT4G35240			Protein of unknown function (D...		Lus10016004 [exp]	4.6	0.9617
AT5G57830			Protein of unknown function, D...		Lus10022171 [exp]	4.9	0.9601
AT5G46340		RWA1	REDUCED WALL ACETYLATION 1, O-...		Lus10012523 [exp]	5.1	0.9708
AT5G60720			Protein of unknown function, D...		Lus10016114 [exp]	6.0	0.9742

Compare expression of checked genes

Lus10008225 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.