Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44030 671 / 0 IRX5, NWS2, CESA4 IRREGULAR XYLEM 5, cellulose synthase A4 (.1) AT5G17420 629 / 0 ATCESA7, MUR10, IRX3 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) AT5G05170 618 / 0 IXR1, CEV1, ATH-B, ATCESA3, CESA3 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) AT5G64740 595 / 0 PRC1, IXR2, E112, CESA6 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) AT2G21770 591 / 0 CESA09, CESA9 cellulose synthase A9 (.1) AT4G18780 589 / 0 LEW2, IRX1, ATCESA8, CESA8 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) AT2G25540 585 / 0 CESA10 cellulose synthase 10 (.1) AT4G32410 559 / 0 AtCESA1, RSW1, CESA1 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) AT5G09870 550 / 0 CESA5 cellulose synthase 5 (.1) AT4G39350 532 / 1e-179 ATH-A, CESA2, ATCESA2 cellulose synthase A2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012198 [exp] 639 / 0 AT5G05170 1774 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10007538 [exp] 639 / 0 AT5G05170 1772 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10039607 [exp] 628 / 0 AT5G05170 1820 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10028597 [exp] 608 / 0 AT4G32410 1922 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Lus10018902 [exp] 608 / 0 AT4G32410 1915 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Lus10002939 [exp] 588 / 0 AT5G64740 1870 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10007296 [exp] 580 / 0 AT4G18780 1671 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) Lus10029245 [exp] 577 / 0 AT4G18780 1659 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) Lus10003526 [exp] 553 / 0 AT5G64740 1863 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G257900 [exp] 756 / 0 AT5G44030 1526 / 0.0 IRREGULAR XYLEM 5, cellulose synthase A4 (.1) Potri.006G181900 [exp] 630 / 0 AT5G17420 1730 / 0.0 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) Potri.018G103900 [exp] 627 / 0 AT5G17420 1730 / 0.0 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) Potri.004G059600 [exp] 624 / 0 AT4G18780 1655 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) Potri.006G052600 [exp] 617 / 0 AT5G05170 1749 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Potri.006G251900 [exp] 612 / 0 AT4G32410 1899 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Potri.018G029400 [exp] 608 / 0 AT4G32410 1898 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Potri.016G054900 [exp] 595 / 0 AT5G05170 1754 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Potri.005G027600 [exp] 591 / 0 AT5G64740 1506 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.009G060800 [exp] 590 / 0 AT5G05170 1838 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03552 [flax] [poplar] Cellulose_synt Cellulose synthase
Representative CDS sequence Show only first row Show all	>Lus10008226 pacid=23164907 polypeptide=Lus10008226 locus=Lus10008226.g ID=Lus10008226.BGIv1.0 annot-version=v1.0 ATGAAAGGCTTAGATGGGATCCAAGGACCAGTCTATGTAGGAACAGGGTGTGTCTTTAACAGGCAAGCTTTGTACGGCTATGATCCACCAGCGTCTGAAA AGAGGCCTAAAATGACTTGTGATTGCTGGCCTTCTTGGTGCTGCTGTTGCTTTGGTCGTTCAAAGAAATCAAAATCTAAGAAGAAGGGCCAGAGAAGCCT ACTTGGAGGACTTGTTTCACAGAAGAAGAAAATGGGAGGGAAGCGCTACAGCAAGAAAAGTGCTATCCCAGCTTTCGAACTCGAAGAGATCGAAGAAGGA CTTGAAGGGTACGAAGAATTGGAGAAATCATCACTAATGTCTCAGAAGAACTTTGAGAAACGGTTTGGTCAATCCCCAGTTTTCATTGCTTCCACCTTGA TGGAAGCAGGTGGCTTGCCTGAAGGAACTACTTCTTCATCTCTCATCAAGGAGGCCATTCATGTCATCAGTTGTGGGTACGAAGAGAAAACAGATTGGGG CAAAGAGGTTGGATGGATTTACGGTTCTGTTACAGAAGATATTCTGACCGGCTTCAAGATGCACTGTAGAGGATGGAAATCGGTTTATTGCTGTCCAGAG AGAGCTGCTTTTAGAGGATCAGCTCCCATTAACTTGTCAGATCGTCTGCATCAAGTTCTGAGATGGGCTTTAGGATCTATCGAAATTTTCATGAGTCATC ACTGCCCACTCTGGTATGGCTGGGGAGGAAAACTGAAATTCCTTCAGAGGCTTGCTTACATCAACACTGTCGTTTATCCTTTCACCTCCATTCCTTTACT TGCCTACTGCACCATCCCTGCCGTCTGCCTCCTAACAGGAAAATTCATCATCCCAACTATCAGCAATCTTGCCAGTATATGGTTCTTGGCGCTTTTCCTC TCAATCATAGCAACAAGTGTCCTGGAGCTCCGGTGGAGTGGAGTATCGATCGAAGACCTGTGGCGAAACGAGCAGTTCTGGGTAATCGGTGGAGTCTCAG CCCATCTCTTTGCTGTCTTCCAAGGCCTTCTCAAGGTCCTTGGAGGAGTTGACACAAACTTTACTGTTACATCGAAAGCAGCCGATGACTCGGAGTTTGG GGATCTATACCTCTTCAAATGGACAACCCTTCTCATCCCACCAACCACCCTGATCATCCTGAACCTGGTGGGAGTTGTTGCAGGGGTTTCTGATGCAATC AACAATGGGTATGGATCGTGGGGGCCGTTATTCGGGAAGCTGTTCTTTGCCTTCTGGGTCATCGTCCATCTCTACCCGTTCCTGAAAGGTCTTATGGGAA AGCAAAACAGGACTCCTACCATAGTTGTACTGTGGTCGATTCTGTTGGCTTCGATTTTCTCACTGGTTTGGGTCAGGATTGATCCCTTCTTGCCCAAGCA AACCGGACCTATTCTCAAGCAATGTGGGGTTGAGTGCTAA
AA sequence Show only first row Show all	>Lus10008226 pacid=23164907 polypeptide=Lus10008226 locus=Lus10008226.g ID=Lus10008226.BGIv1.0 annot-version=v1.0 MKGLDGIQGPVYVGTGCVFNRQALYGYDPPASEKRPKMTCDCWPSWCCCCFGRSKKSKSKKKGQRSLLGGLVSQKKKMGGKRYSKKSAIPAFELEEIEEG LEGYEELEKSSLMSQKNFEKRFGQSPVFIASTLMEAGGLPEGTTSSSLIKEAIHVISCGYEEKTDWGKEVGWIYGSVTEDILTGFKMHCRGWKSVYCCPE RAAFRGSAPINLSDRLHQVLRWALGSIEIFMSHHCPLWYGWGGKLKFLQRLAYINTVVYPFTSIPLLAYCTIPAVCLLTGKFIIPTISNLASIWFLALFL SIIATSVLELRWSGVSIEDLWRNEQFWVIGGVSAHLFAVFQGLLKVLGGVDTNFTVTSKAADDSEFGDLYLFKWTTLLIPPTTLIILNLVGVVAGVSDAI NNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGKQNRTPTIVVLWSILLASIFSLVWVRIDPFLPKQTGPILKQCGVEC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44030		IRX5, NWS2, CES...	IRREGULAR XYLEM 5, cellulose s...		Lus10008226 [exp]	0	1
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Lus10040953 [exp]	1.0	0.9850
AT3G50760		GATL2	galacturonosyltransferase-like...		Lus10010790 [exp]	1.7	0.9792
AT3G15480			Protein of unknown function (D...		Lus10032662 [exp]	2.4	0.9770
AT5G61340			unknown protein		Lus10034727 [exp]	3.5	0.9813
AT3G16070			unknown protein		Lus10034910 [exp]	3.7	0.9710
AT5G66120			3-dehydroquinate synthase, put...		Lus10028429 [exp]	6.7	0.9706
AT3G25290			Auxin-responsive family protei...		Lus10025877 [exp]	7.5	0.9687
AT5G16490		RIC4	ROP-interactive CRIB motif-con...		Lus10036433 [exp]	7.7	0.9771
AT3G18660		PGSIP1, GUX1	glucuronic acid substitution o...		Lus10020890 [exp]	8.5	0.9781
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10022680 [exp]	8.5	0.9676

Compare expression of checked genes

Lus10008226 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.