Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G35720 455 / 2e-162 ATOXY5, ANNAT1 annexin 1 (.1) AT5G65020 384 / 2e-134 ANNAT2 annexin 2 (.1.2) AT5G10230 381 / 2e-133 ANN7, ANNAT7 annexin 7 (.1) AT5G10220 366 / 3e-127 ANN6, ANNAT6 ANNEXIN ARABIDOPSIS THALIANA 6, annexin 6 (.1) AT5G12380 291 / 7e-98 ANNAT8 annexin 8 (.1) AT2G38760 218 / 5e-69 ANN3, ANNAT3 annexin 3 (.1) AT1G68090 206 / 1e-64 ANN5, ANNAT5 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) AT2G38750 165 / 1e-48 ANNAT4 annexin 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003611 [exp] 620 / 0 AT1G35720 476 / 1e-170 annexin 1 (.1) Lus10041140 [exp] 483 / 1e-173 AT1G35720 414 / 2e-146 annexin 1 (.1) Lus10036470 [exp] 478 / 3e-171 AT1G35720 406 / 3e-143 annexin 1 (.1) Lus10024054 [exp] 345 / 5e-119 AT5G65020 400 / 6e-141 annexin 2 (.1.2) Lus10041696 [exp] 337 / 2e-115 AT5G65020 395 / 2e-138 annexin 2 (.1.2) Lus10019780 [exp] 298 / 2e-100 AT5G12380 372 / 1e-129 annexin 8 (.1) Lus10024174 [exp] 253 / 9e-83 AT2G38760 361 / 4e-125 annexin 3 (.1) Lus10024172 [exp] 250 / 2e-81 AT2G38760 349 / 1e-120 annexin 3 (.1) Lus10039550 [exp] 223 / 1e-70 AT2G38760 323 / 2e-109 annexin 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G095600 [exp] 465 / 3e-166 AT1G35720 481 / 1e-172 annexin 1 (.1) Potri.007G092500 [exp] 416 / 6e-147 AT5G65020 488 / 2e-175 annexin 2 (.1.2) Potri.005G075900 [exp] 414 / 5e-146 AT5G65020 472 / 3e-169 annexin 2 (.1.2) Potri.003G200700 [exp] 301 / 9e-102 AT5G12380 399 / 3e-140 annexin 8 (.1) Potri.001G277500 [exp] 289 / 6e-97 AT5G12380 442 / 3e-157 annexin 8 (.1) Potri.001G024800 [exp] 244 / 2e-79 AT2G38760 395 / 1e-138 annexin 3 (.1) Potri.012G041900 [exp] 201 / 9e-63 AT1G68090 358 / 3e-124 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Potri.001G024900 [exp] 201 / 1e-62 AT2G38750 371 / 2e-129 annexin 4 (.1) Potri.015G031800 [exp] 201 / 2e-62 AT1G68090 356 / 3e-123 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Potri.008G139500 [exp] 182 / 2e-55 AT1G68090 363 / 4e-126 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00191 [flax] [poplar] Annexin Annexin
Representative CDS sequence Show only first row Show all	>Lus10008227 pacid=23164933 polypeptide=Lus10008227 locus=Lus10008227.g ID=Lus10008227.BGIv1.0 annot-version=v1.0 ATGGCCACTCTCACAGTTCCTCACCAGGTCCCCGATGTTGCTGAAGACTGCGAACAGCTCCGAAAGGCCTTCTCAGGATGGGGCACAAACGAGGGATTGA TCATCTCGATTCTGGGACACAGGAACGCCGATCAGCGGAAGCTCATCAGAGAGACGTACCAATCCACCTACGGAGAAGAACTGCTCAAGGAACTTGACGG GGAGCTCTCCAACGACTTCGAGAGGGCTGTGCTGCTCTGGACGCTGAGCCCTGCTGAGCGCGATGCTATTCTGGCGAACGAAGCTACTAAGAGATGGACC TCCAGCAACCAGGTGATTATGGAGATCGCCTGCACCAGATCCTCCAAGCAGCTTCTGGAGGCTAAACAGGCTTACCACGCTCGTTTCAAGAAATCGATTG AGGAGGATGTCGCTCACCACACCACTGGTGATTTCCGTAAGCTCCTCTTCTCCCTCATCGCCTGCCACCGCTATGAAGGGGATGAGGTCAACATGACTTT GGCTAAACAGGAAGCCAAGATCCTCAATGACAAGTTTGATGATAAGCATTTCGCCGATGATGAGGTGATCAGGATCCTCTCCACAAGGAGCAAAGTTCAA GTCAACGCTGCTCTTAACCAGTACAAGAGTCTTTACGGCCATGAAATCCTTGAGGCACTGAAGGAGGACTCGGATGACGAGTTCATTTGGCTGCTAAGGT CGACCATCAAGTGCCTGACTCGTCCGGAGGAGTACTTTGTGGAGGTGGTCCATGGATCGATCCACAAGACAGGGACGGATGAAGGAGCTCTTACAAGGGT TGTGGTGAGTAGGGCAGAGGTTGATCTGAAGATCATAAAAGAAGAGTACCAGCGAAGACACAGTGTGTCACTGGAGAAAGCCATTACCAAGGATACCTCT GGTGACTATGAGAAGATGCTCTTGGCACTTACTGGTCATCAGGATGACTGA
AA sequence Show only first row Show all	>Lus10008227 pacid=23164933 polypeptide=Lus10008227 locus=Lus10008227.g ID=Lus10008227.BGIv1.0 annot-version=v1.0 MATLTVPHQVPDVAEDCEQLRKAFSGWGTNEGLIISILGHRNADQRKLIRETYQSTYGEELLKELDGELSNDFERAVLLWTLSPAERDAILANEATKRWT SSNQVIMEIACTRSSKQLLEAKQAYHARFKKSIEEDVAHHTTGDFRKLLFSLIACHRYEGDEVNMTLAKQEAKILNDKFDDKHFADDEVIRILSTRSKVQ VNAALNQYKSLYGHEILEALKEDSDDEFIWLLRSTIKCLTRPEEYFVEVVHGSIHKTGTDEGALTRVVVSRAEVDLKIIKEEYQRRHSVSLEKAITKDTS GDYEKMLLALTGHQDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G35720		ATOXY5, ANNAT1	annexin 1 (.1)		Lus10008227 [exp]	0	1
AT1G52330			Late embryogenesis abundant (L...		Lus10037534 [exp]	2.0	0.8988
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10003217 [exp]	2.4	0.8591
AT5G40250			RING/U-box superfamily protein...		Lus10032161 [exp]	3.5	0.8551
AT1G26140			unknown protein		Lus10035070 [exp]	6.9	0.8483
AT2G39570		ACR9	ACT domain repeats 9, ACT doma...		Lus10005157 [exp]	7.1	0.8282
AT1G30630			Coatomer epsilon subunit (.1)		Lus10023385 [exp]	8.1	0.8372
AT4G28300			Protein of unknown function (D...		Lus10033692 [exp]	8.4	0.8330
AT1G31940			unknown protein		Lus10010425 [exp]	9.0	0.8404
AT5G22360		ATVAMP714	vesicle-associated membrane pr...		Lus10034189 [exp]	11.0	0.8495
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Lus10027924 [exp]	11.7	0.8191

Compare expression of checked genes

Lus10008227 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.