Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08850 261 / 8e-81 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT1G35710 244 / 1e-74 Protein kinase family protein with leucine-rich repeat domain (.1) AT1G17230 189 / 9e-55 Leucine-rich receptor-like protein kinase family protein (.1) AT5G48940 187 / 2e-54 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT3G24240 187 / 3e-54 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G63930 186 / 6e-54 Leucine-rich repeat protein kinase family protein (.1) AT3G49670 185 / 1e-53 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT2G33170 185 / 1e-53 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT4G20270 185 / 2e-53 BAM3 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) AT1G34110 182 / 1e-52 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003612 [exp] 486 / 4e-165 AT1G35710 751 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10020936 [exp] 250 / 6e-78 AT4G08850 793 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10008712 [exp] 252 / 2e-77 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020935 [exp] 249 / 1e-76 AT4G08850 1011 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10005016 [exp] 218 / 3e-71 AT4G08850 268 / 5e-83 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10031161 [exp] 229 / 2e-69 AT4G08850 710 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019036 [exp] 225 / 1e-67 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10002293 [exp] 220 / 6e-66 AT1G35710 781 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10019035 [exp] 207 / 2e-61 AT4G08850 861 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G195100 [exp] 387 / 1e-126 AT1G35710 681 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.002G258400 [exp] 385 / 8e-126 AT1G35710 681 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.002G258000 [exp] 377 / 4e-123 AT4G08850 695 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.002G258200 [exp] 373 / 1e-121 AT4G08850 674 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G124100 [exp] 265 / 2e-89 AT4G08850 293 / 3e-92 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G122900 [exp] 270 / 8e-85 AT4G08850 667 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G123400 [exp] 269 / 1e-83 AT4G08850 708 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G124400 [exp] 268 / 1e-83 AT4G08850 644 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G123100 [exp] 266 / 2e-83 AT4G08850 664 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.015G123700 [exp] 266 / 9e-83 AT4G08850 688 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10008229 pacid=23164936 polypeptide=Lus10008229 locus=Lus10008229.g ID=Lus10008229.BGIv1.0 annot-version=v1.0 ATGTTGACGGAGATTAGGCACAGGAACATCATCAAGTTGTACGGATTCTGTTCAAGTAAAGGGTGCTTGTACTTGGTGTATGAGTTCATTGAAAGAGGAA GTCTAGGGAAAGTGTTGTACGGGATAGAAGGCGAATCTGAGCTTGGTTGGGCTACTAGGGTGAAAATTGTGAAAGGTTTGGCTCATGCAGTTGCTTACTT GCACCATGACTGCACGCCTGCAATCGTGCATCGAGACATATCTATGAACAATGTATTGGTGGAGTCCGATTTCGAGCCGAGGCTTGCTGATTTCGGCACA GCTCGATTGCTCAGCACGGATTCATCCAACTGGACCACTGTGGCTGGTTCTTATGGCTACATGGCTCCTGAGCTGGCAGTGACAATGAGAGTAACAGACA AATGCGACGTCTACAGTTTCGGAGTGGTCGCGTTGGAAATCATGATGGGAAAGCACCCAGGAGAATTCTTATTATCATCCCCTGCAGATAATAGCAGTGA ACTCTGCTTGAAGGAGATTCTAGACCAGAGGATTCCTGGTCCCACGGATCAGTTAGCTGAGGAGGTGCTATTCGTACTAACAGCTGCATTGGCTTGTACC CGTACCAAGCCCGATTTACGACCCACAATGCGGTTCGTGGCACAGGAAATCTCGGCTCGAACTCAGCCACTTGATAAGATTACAGTCAGCAAGGTGACCG GGTTCCAGAAATAG
AA sequence Show only first row Show all	>Lus10008229 pacid=23164936 polypeptide=Lus10008229 locus=Lus10008229.g ID=Lus10008229.BGIv1.0 annot-version=v1.0 MLTEIRHRNIIKLYGFCSSKGCLYLVYEFIERGSLGKVLYGIEGESELGWATRVKIVKGLAHAVAYLHHDCTPAIVHRDISMNNVLVESDFEPRLADFGT ARLLSTDSSNWTTVAGSYGYMAPELAVTMRVTDKCDVYSFGVVALEIMMGKHPGEFLLSSPADNSSELCLKEILDQRIPGPTDQLAEEVLFVLTAALACT RTKPDLRPTMRFVAQEISARTQPLDKITVSKVTGFQK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08850			Leucine-rich repeat receptor-l...		Lus10008229 [exp]	0	1
AT1G27440		ATGUT1, IRX10, ...	Exostosin family protein (.1)		Lus10043326 [exp]	4.2	0.9748
AT2G41610			unknown protein		Lus10030172 [exp]	5.8	0.9709
AT3G51325			RING/U-box superfamily protein...		Lus10040617 [exp]	6.0	0.9695
AT3G52480			unknown protein		Lus10029407 [exp]	7.0	0.9579
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Lus10016301 [exp]	11.0	0.9606
AT1G27440		ATGUT1, IRX10, ...	Exostosin family protein (.1)		Lus10019479 [exp]	12.0	0.9646
AT5G16490		RIC4	ROP-interactive CRIB motif-con...		Lus10036433 [exp]	16.3	0.9610
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Lus10010789 [exp]	18.2	0.9550
AT1G18265			Protein of unknown function, D...		Lus10007082 [exp]	18.2	0.9523
AT5G16490		RIC4	ROP-interactive CRIB motif-con...		Lus10041106 [exp]	23.5	0.9551

Compare expression of checked genes

Lus10008229 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.