Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G35710 404 / 6e-124 Protein kinase family protein with leucine-rich repeat domain (.1) AT4G08850 387 / 2e-118 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT4G20140 387 / 2e-116 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G44700 381 / 3e-114 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT5G63930 348 / 3e-103 Leucine-rich repeat protein kinase family protein (.1) AT1G73080 339 / 4e-100 ATPEPR1, PEPR1 PEP1 receptor 1 (.1) AT2G33170 338 / 1e-99 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G46330 332 / 5e-97 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT1G17230 326 / 2e-95 Leucine-rich receptor-like protein kinase family protein (.1) AT1G17750 323 / 1e-94 AtPEPR2 PEP1 receptor 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003612 [exp] 1261 / 0 AT1G35710 751 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10008712 [exp] 424 / 7e-132 AT4G08850 1009 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020935 [exp] 411 / 4e-127 AT4G08850 1011 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10020936 [exp] 364 / 4e-112 AT4G08850 793 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10002293 [exp] 369 / 2e-111 AT1G35710 781 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10023681 [exp] 354 / 6e-107 AT2G33170 1152 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10036251 [exp] 358 / 3e-106 AT4G20140 1495 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10027688 [exp] 341 / 2e-101 AT4G20140 707 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10031161 [exp] 340 / 2e-101 AT4G08850 710 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G195100 [exp] 980 / 0 AT1G35710 681 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.002G258200 [exp] 971 / 0 AT4G08850 674 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.002G258400 [exp] 961 / 0 AT1G35710 681 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.002G258000 [exp] 932 / 0 AT4G08850 695 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Potri.014G195200 [exp] 637 / 0 AT1G35710 715 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G120733 [exp] 477 / 1e-149 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G120700 [exp] 477 / 1e-149 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G129100 [exp] 475 / 1e-149 AT1G35710 863 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G122500 [exp] 424 / 5e-131 AT1G35710 846 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G099200 [exp] 409 / 2e-127 AT4G08850 654 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10008230 pacid=23164931 polypeptide=Lus10008230 locus=Lus10008230.g ID=Lus10008230.BGIv1.0 annot-version=v1.0 ATGACCACCCATCATATTTTCCTTCTCTTCTTCCATGCCATTTTGCTCTCCTCTCTTCCCTTAAACATCACAGCATCTCCAAGAACACAAGCCGAAGCTC TCATCAAATGGAAAACCACTCTAAGTTACTCCCCTCCTTCCCTCAATTCATGGTCTCGTTCCAACCTGAGAAACCTTTGCAACTGGACCGGCATCACCTG CAACCGCTCAACCCGCTCTGTCTCTGGAATCACTCTCTCCAACTTAAACATAAATGGAGATCTTTCTCAGTTCGAGTTTGGTCCGTTTGCAAATGTCACC AGCTTTGACATCCAGAACAACTTCATTGGTGGTGTCATACCATCCACCATTGGTAGCCTTACCAAGCTAACTTACTTGGATTTAAGTGTCAACTCTTTTG TAGGTAATATACCTGCAGAGATTGGGCAGCTAATGGAGCTTCGTTATCTCAGCGTTTTCAACAACACTCTGAATGGTACGGTCTCTTTTCAAGTTAGCAG ACTTCAAAAAGTACAGTTCGTTGACCTTGGAGCCAACTATTTGGAGACCCCTGATTGGTCTGAATTTTCCGGTATGCCTTCATTGACACACTTGAGCTTT TATCTCAACAACCTTGCTCATGGATTCCCTGATTTTGTCTCTAATTGCCCCAAGTTGACATTTCTGGATTTGTCATGGAATGAGTTCACTGGCGGGATAC CAGAGTGGGTCTATACCAATCTGGAAAACATTGAGTTTTTGAATCTCACAGTGAATTCTTTCCAAGGACCATTATCACCCAACATATCCAAGCTTTCCAA GCTTAAGAACCTTCACCTTTCAAGTAACAATTTCAGTGGTCAAATCCCTGCAAGTATTGGTTTTATCCCTAGCCTACAAGTGCTTGAGTTGTCCAACAAT TTGTTACAAGGAAATATTCCTTCTTCTTTGGGCCGACTTAAGAAACTGGAACTACTAGATCTTGGAACGAATCACTTGAACTCAACAGTACCTTCTGAGA TTGGTCTCTGCACTGGTCTCACCTACCTAGGTTTAGCGTTAAATCAGCTTAGCGGAGAACTTCCATTGTCATTGTCCAATCTGAATAACCTGTTGGAGTT TGGTTTATCTGATAATCTTTTCTCTGGAGTGATCTCAGCTGGCCTGTTTGCCAATTGGACACAGTTGGGATCTTTCCAACTTCAAAACAACCTCTTATCA GGAACGATTCCGCCACAAATAGGAAAACTGAAGAATCTCAGTCTTCTTTTCCTATACAATAATACACTTTCTGGTCCAATTCCCCCAGAGATTGGACACC TGGAAAGTTTGTCACTTCTGGACCTGTCAGTAAATCATCTTTCAGGGAGGATTCCTGCAACAATATGGTTTCTCACAAGTCTCGACACTTTGAATCTTTT CTCGAACAATCTCAGTGGCACAATTCCTCCACAGGTTGGGAATATGAAATCATTGAGAGTTCTTGATCTCAACTCCAACCAACTGTATGGAGAGTTACCG GAGACCATTTCCAACCTCGTCTCTTTGAATTCAATCAGCCTATTCAACAACAATTTCAGCGGCTCCGTTCCCAGAGACCTTGGGAAGCACATGCCTTCTC TCCAACGTGCTAGCTTCTCTGAGAACAGCTTCTCCGGAGAGTTGCCTCCTGAACTATGTAGTGGTTTGGCTCTTGAACAACTGAATGTTAATGCAAACAA CTTTACAGGGTCACTGCCTTCCTGTCTGAAAAATTGTTCGGAGCTAGTTAGACTCCGGCTCGATGAGAACCAGTTCACTGCCAACATCACTGATGCTTTT GGAGTCCATCCAAATCTTGTTTTTGTGTCTCTCGCAGGAAATCAGTTTGTGGGGGCCATATCCTCACTGTGGGGAGAATGCAAGAACCTCACTAACTTGC AGCTGGATGGAAACAGGATTTCTGGTAAAATTCCTACCGAGCTTGGAAAGTTGCACAATTTGAGGGTTCTGACTCTGGAATCAAATGACTTGAGGGGGAC TATTCCTCCTGAGTTGGGTAATCTAACCTTTCTATACAGGCTTAATCTGAGCAGCAATTACTTGATGGAGGAGATCCCTCGAACCCTAGGCGGACTGTCA AAGCTCGAGTCTCTTGATTTATCTGGCAACAATCTGACTGGAGATGTTCCCAAAGAGCTTGGTAACTGTGAGAAGTTGTCAAGTTTAGACTTGAGCCATA ACAATCTATGGGGAGAAATCCCATCCGAGCTTGGTAATCTAATGGCATTGCAGTACCTATTGGACCTCAGCAGCAACTCGCTCTCAGGAGAAATACCTCA AAATCTGGGGAAGCTATCAGCATTGGAGAATCTCAACATCTCACATAATAATCTAATGGGGAGGATTCCAAATTCTGTATCCGGAATGTTAAGTCTGCAT GTTATTGACTTCTCGTACAACAACCTGACAGGTTCTATTCCAACTGATAACTTCTTCCGCAATGCATCTCCAGAAGCTTTTGCTGGTAATCCTGGCTTGT GCGGAAAGCTAGAAGGCTTACCTCCATGCAATCCAGGAAACAGCACTGGTTCCTCCAAGTACGACAAGAAGATTCTCATTAGCATCATCGTTCCAGTTTG TGGGCTACTGCTGGGGCTAGCAGCTACTTTGCTTATTGCATGTCGACGAAGACATCAGCTTGCGGATGAAGATGCTAAAAGCATGAACAGGTACGAGGCT TCCAACTCGTTAATTTGGGACAGGGACGGTAAATTCACATTCGGAGACGTTTCCAAGGCCACCGATAACTTCAACGACAAGTTTTGCATCGGAAGAGGAG GTTTTGGTAGTGTGTACAGAGCAGAGATGACGTGTGTACAGAGCAGAGATGACAGCGGGGCAAGTTGTGGCAGTGAAGAAGCTGAATGTTTCGAGTTCAG GCGAGGTCCCAGCTGCAAATCGGCAGAGTTTCGAGAATGA
AA sequence Show only first row Show all	>Lus10008230 pacid=23164931 polypeptide=Lus10008230 locus=Lus10008230.g ID=Lus10008230.BGIv1.0 annot-version=v1.0 MTTHHIFLLFFHAILLSSLPLNITASPRTQAEALIKWKTTLSYSPPSLNSWSRSNLRNLCNWTGITCNRSTRSVSGITLSNLNINGDLSQFEFGPFANVT SFDIQNNFIGGVIPSTIGSLTKLTYLDLSVNSFVGNIPAEIGQLMELRYLSVFNNTLNGTVSFQVSRLQKVQFVDLGANYLETPDWSEFSGMPSLTHLSF YLNNLAHGFPDFVSNCPKLTFLDLSWNEFTGGIPEWVYTNLENIEFLNLTVNSFQGPLSPNISKLSKLKNLHLSSNNFSGQIPASIGFIPSLQVLELSNN LLQGNIPSSLGRLKKLELLDLGTNHLNSTVPSEIGLCTGLTYLGLALNQLSGELPLSLSNLNNLLEFGLSDNLFSGVISAGLFANWTQLGSFQLQNNLLS GTIPPQIGKLKNLSLLFLYNNTLSGPIPPEIGHLESLSLLDLSVNHLSGRIPATIWFLTSLDTLNLFSNNLSGTIPPQVGNMKSLRVLDLNSNQLYGELP ETISNLVSLNSISLFNNNFSGSVPRDLGKHMPSLQRASFSENSFSGELPPELCSGLALEQLNVNANNFTGSLPSCLKNCSELVRLRLDENQFTANITDAF GVHPNLVFVSLAGNQFVGAISSLWGECKNLTNLQLDGNRISGKIPTELGKLHNLRVLTLESNDLRGTIPPELGNLTFLYRLNLSSNYLMEEIPRTLGGLS KLESLDLSGNNLTGDVPKELGNCEKLSSLDLSHNNLWGEIPSELGNLMALQYLLDLSSNSLSGEIPQNLGKLSALENLNISHNNLMGRIPNSVSGMLSLH VIDFSYNNLTGSIPTDNFFRNASPEAFAGNPGLCGKLEGLPPCNPGNSTGSSKYDKKILISIIVPVCGLLLGLAATLLIACRRRHQLADEDAKSMNRYEA SNSLIWDRDGKFTFGDVSKATDNFNDKFCIGRGGFGSVYRAEMTCVQSRDDSGASCGSEEAECFEFRRGPSCKSAEFRE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Lus10008230 [exp]	0	1
AT1G35710			Protein kinase family protein ...		Lus10003612 [exp]	1.0	0.9755
AT5G22860			Serine carboxypeptidase S28 fa...		Lus10008358 [exp]	1.4	0.9541
AT5G48740			Leucine-rich repeat protein ki...		Lus10025926 [exp]	2.8	0.9443
AT2G46770	NAC	NST1, ANAC043, ...	NAC SECONDARY WALL THICKENING...		Lus10002687 [exp]	5.7	0.9495
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Lus10033792 [exp]	6.3	0.9248
AT1G43650			nodulin MtN21 /EamA-like trans...		Lus10018889 [exp]	7.3	0.9283
AT2G46770	NAC	NST1, ANAC043, ...	NAC SECONDARY WALL THICKENING...		Lus10030205 [exp]	7.4	0.9242
AT5G48740			Leucine-rich repeat protein ki...		Lus10038174 [exp]	10.6	0.9037
AT1G29170		ATSCAR3, WAVE2	WASP \(WISKOTT-ALDRICH SYNDROM...		Lus10001897 [exp]	10.9	0.9143
AT4G35240			Protein of unknown function (D...		Lus10012276 [exp]	11.4	0.9342

Compare expression of checked genes

Lus10008230 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.