Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04030 121 / 5e-30 unknown protein AT5G44040 101 / 5e-23 unknown protein AT1G06660 57 / 1e-08 JASON JASON, unknown protein AT2G30820 57 / 2e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003613 [exp] 531 / 0 AT1G04030 211 / 1e-63 unknown protein Lus10001051 [exp] 56 / 4e-08 AT1G06660 283 / 6e-90 JASON, unknown protein Lus10020732 [exp] 54 / 1e-07 AT1G06660 310 / 1e-100 JASON, unknown protein Lus10001417 [exp] 53 / 4e-07 AT1G06660 228 / 3e-69 JASON, unknown protein Lus10023739 [exp] 48 / 7e-06 AT2G33400 95 / 1e-22 unknown protein Lus10011782 [exp] 46 / 4e-05 AT2G33400 83 / 3e-18 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G258501 [exp] 150 / 3e-40 AT1G04030 172 / 1e-48 unknown protein Potri.013G047700 [exp] 82 / 1e-16 AT1G04030 147 / 1e-39 unknown protein Potri.002G057000 [exp] 69 / 2e-12 AT1G06660 325 / 7e-106 JASON, unknown protein Potri.005G205700 [exp] 63 / 2e-10 AT1G06660 275 / 6e-87 JASON, unknown protein Potri.010G067300 [exp] 44 / 0.0002 AT2G33400 79 / 1e-16 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008231 pacid=23164932 polypeptide=Lus10008231 locus=Lus10008231.g ID=Lus10008231.BGIv1.0 annot-version=v1.0 ATGGGTTGCTTCCTTGGGTGTTTTGGTTCCTCCAAAGATCGCCGGAGAAAATCCCGTAAGCAGCAGCAGCAGCACAAGAAGCACAACAAGGTTCAGCCTC GTTTCCAGGTACACGATCATTTCCACGATCTTGCTCTCGTTGATTCACTAGGACTTTTCCATGTCCATTTCATCGGGCTTTTAGAGCTTCATAAATCAAT TACCGTCGCTAGGAATCCCGCCGATCAAAATCTTGTCCCATCTATTGTTCCGATTGGGGAGCAGAATAGGATGCCAGAGAAACCAGTGATAATCAGCGCA GTCGTGGAAGAAGAAATCCAGGAGGAGGAGTTGGTCAGTGCGGTTCTTCGTAAGAAAGTAACGTTTGATTCCAATGTGAGGACTTACGAGCCAGTTTCTG TGAAAGCATCCGCTGAATTTCTTCCCCCGGATAAAGATGAACAAAAAGAAGATAATGACGAGTACAAGCTTAGAAAGCAAGACCAATCCGATGCCTCGTC TGAAGGCAGTTCCGTGACCTCAAGCTCCACCTCTTACCCATCCAACCATCGGTACCAGAATTGTCGAGATAGCGATGATGAATTGGATATGGAGGACCGA TCTGATTCCGATTCTGATTCCGATTCTGATGAGGACGATTATGAGAATGGGGAGCTGGAATACAACAATATGTACGACGATCCGAGCTCTAGATTCGCAG TCTACGAGGAGGGTTTCGAGGGAAAGCCAGGTCGGAATGTGCGAGAGAGGAGTGGATATGTACATCCAGTGCTGAATCCAGTAGAGAATTTGAGCCAATG GAAGGCTGCCAAATCTAAAAAGTCATCTTCAGCAGTAGCAACACCACAGTTGAAGCCTTCTGACAAGGAGAATCATGAACAAGAAATCCTAGAGCCTAGC TTCAAGGTCAAGAAACCAAACAAGGAGGACGTAGGGGGAATAGCAGTGGATGCCAGCTTATCCAACTGGTTGAGTGCCACATCATCAGTGTCCTCAGACT GCTGCAGTACACCACTCAACAAGCAGCAGCCTGCTACTACCGCTACACTTAGTCCACCGGAGAGGAGCTACTCCGGCTCCCCGAATAGCTTCGAGGATCG GCCGATCCTGGGGGCATTGACACTGGAAGAGATAAGGCAGATGTCGGCATCGAATTCGCCGATGAGGAAGTCACCCGGTGGTCACAGCCCTGATGACATG CCCATTATTGGGAGTGTTGGGAGCTATTGGAGTGAGAGTGATAGCAGTAGTAGTAAGAAGGAACTCAGCTCCGCTGCTTCTTCGTCTTTTAAAGGGATCC CTAACACTACCAGCAAGTACAGAGAGGATAAGAGAGTGAATTGGCACACAACTCCATTTGAGACGAGGCTGGAGAGAGCTTTGAATAATGCAGGCCAAGT TGGTGGTGCTGATGATGCTTTTTAA
AA sequence Show only first row Show all	>Lus10008231 pacid=23164932 polypeptide=Lus10008231 locus=Lus10008231.g ID=Lus10008231.BGIv1.0 annot-version=v1.0 MGCFLGCFGSSKDRRRKSRKQQQQHKKHNKVQPRFQVHDHFHDLALVDSLGLFHVHFIGLLELHKSITVARNPADQNLVPSIVPIGEQNRMPEKPVIISA VVEEEIQEEELVSAVLRKKVTFDSNVRTYEPVSVKASAEFLPPDKDEQKEDNDEYKLRKQDQSDASSEGSSVTSSSTSYPSNHRYQNCRDSDDELDMEDR SDSDSDSDSDEDDYENGELEYNNMYDDPSSRFAVYEEGFEGKPGRNVRERSGYVHPVLNPVENLSQWKAAKSKKSSSAVATPQLKPSDKENHEQEILEPS FKVKKPNKEDVGGIAVDASLSNWLSATSSVSSDCCSTPLNKQQPATTATLSPPERSYSGSPNSFEDRPILGALTLEEIRQMSASNSPMRKSPGGHSPDDM PIIGSVGSYWSESDSSSSKKELSSAASSSFKGIPNTTSKYREDKRVNWHTTPFETRLERALNNAGQVGGADDAF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04030			unknown protein		Lus10008231 [exp]	0	1
AT1G04030			unknown protein		Lus10003613 [exp]	1.0	0.9813
AT5G18700		RUK, EMB3013	RUNKEL, EMBRYO DEFECTIVE 3013,...		Lus10033979 [exp]	5.7	0.9596
AT5G15510			TPX2 (targeting protein for Xk...		Lus10030650 [exp]	5.7	0.9555
AT1G23790			Plant protein of unknown funct...		Lus10013007 [exp]	5.9	0.9507
AT3G15550			unknown protein		Lus10025758 [exp]	6.5	0.9562
AT1G03780		AtTPX2, TPX2	targeting protein for XKLP2 (....		Lus10018608 [exp]	8.8	0.9451
AT3G21620			ERD (early-responsive to dehyd...		Lus10035300 [exp]	10.7	0.9491
AT3G60190		ADL1E, ADL4, AD...	ENHANCED DISEASE RESISTANCE 3,...		Lus10040117 [exp]	11.9	0.9015
AT5G20420		CHR42	chromatin remodeling 42 (.1)		Lus10040956 [exp]	12.6	0.9199
AT4G13370			Plant protein of unknown funct...		Lus10043255 [exp]	13.0	0.9475

Compare expression of checked genes

Lus10008231 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.