Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46050 729 / 0 ATPTR3, PTR3 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) AT5G46040 699 / 0 Major facilitator superfamily protein (.1) AT2G40460 588 / 0 Major facilitator superfamily protein (.1) AT3G54140 529 / 4e-176 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT5G01180 516 / 5e-171 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT1G62200 494 / 3e-162 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT2G02040 489 / 1e-160 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT2G02020 461 / 2e-150 AtPTR4 peptide transporter 4, Major facilitator superfamily protein (.1.2) AT3G53960 451 / 1e-145 Major facilitator superfamily protein (.1) AT2G37900 438 / 4e-141 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003614 [exp] 1179 / 0 AT5G46050 726 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10022891 [exp] 818 / 0 AT5G46050 714 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10022892 [exp] 798 / 0 AT5G46050 688 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10011786 [exp] 793 / 0 AT5G46050 831 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10023743 [exp] 791 / 0 AT5G46050 827 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10024935 [exp] 755 / 0 AT5G46050 654 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10034206 [exp] 558 / 0 AT2G40460 783 / 0.0 Major facilitator superfamily protein (.1) Lus10024933 [exp] 546 / 0 AT5G46050 467 / 2e-161 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Lus10040099 [exp] 509 / 3e-168 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G258900 [exp] 892 / 0 AT5G46050 730 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.002G258700 [exp] 835 / 0 AT5G46050 695 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.010G068100 [exp] 808 / 0 AT5G46050 829 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.008G170100 [exp] 807 / 0 AT5G46050 816 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.019G055800 [exp] 603 / 0 AT2G40460 874 / 0.0 Major facilitator superfamily protein (.1) Potri.010G100200 [exp] 515 / 2e-170 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.009G042400 [exp] 509 / 1e-168 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.001G248600 [exp] 506 / 2e-167 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.016G111800 [exp] 504 / 2e-166 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.006G096800 [exp] 501 / 1e-165 AT3G54140 896 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10008232 pacid=23164939 polypeptide=Lus10008232 locus=Lus10008232.g ID=Lus10008232.BGIv1.0 annot-version=v1.0 ATGGAAAAGCTTGAAGAAAATGGTCCTCCCAAAGAAGGAAATTCGGAAGCTTACACACGAGATGGAACTGTGGATCATCGTAGGAAACCTGTCTTAAGAT CAAGGAGCGGTGGATGGAAAGCTTGTTCCTTCTTTCTGGCGTACGAAGTATTTGAGAGGATGGCCTTTTATGGGATAGCATCGAATTTGGTGGTGTATTT ATCCGAGAAGCTCCATGAAGGCACTGTGAAGTCTTCCAACAATGTCACCACCTGGACTGGAACTGTGTGGATGTTTCCCATCATTGGAGCTTATATTGCA GATGCTCACTTGGGCAGATACTGGACCTTTCTCATTGCAGCAGCACTGTACCTATCGGGGATGTCCCTCTTAACCCTGACAGTTTCAGTGCCTGGCCTCA AGCCTCCATCATGCGATCATGGGATCGGCGGATGTGACAAAAGCGTCTCCAGTTTCCAGAAGGGTATTTTCTATCTTGCGTTATACGCAGTTGCAGCTGG AGCTGGAGGTACAAAACCGAATATTTCCACTATGGGTGCAGACCAATTTGATGATTCTGAACCCAAGGAAAGGCAGTACAAGCTATCATTCTTCAATTGG TGGTTTTTTGGAAGCTTCTTCGGTGCCCTTATCTCCAACAGCCTTTTGATCTACATTCAAGACAATGTTGGTTGGAGCTTAGGCTATGGCCTGCCGACAC TTGGTCTTGCTGTTTCCATCGGTTTGTTCTTGATAGGCACCCCTTTCTATAGGCATAAATTGCCTGTAGGCAGTCCATTCACAAAAATTGCCCGGGTTCT TATTGCTGCTGTGAGGAAATGGAGAATGCCAGTACCAGATGATCCAAAACAGCTTTATGAGCTTGGTTTAGACGAATACTCTAGAGCTGACAAATACAGG ATCGATCATACCAATTCATTAAGCTGCTCCTTCTGCAGGTTCCTCGATAAAGCTGCGGTTAAGATTGGATCAAGTTCCACATGGATGCTTTGTTCCGTTA CTCAAGTTGAAGAAACCAAGCAAATTATCAAAATGGTTCCAGTTCTAGCAGTCACAATCATACCTAATACCATAATAGCCCAAATGAACACATTATTCAT CAAGCAAGGAACCACCCTGAATAGAAGCTGGGGACCTCATTTTCATATCCCTTCAGCATGTTTGACAGCGTTTGTCACAATTTTTATGCTGGTAAGCCTG ATCGTTTATGATCGTTGGTTCATGCCATTCGTTAAACGGTACACAAAGAATCCTCGAGGCATCACTTTGCTACAAAGAATGGCCATAGGCTTGTTCTTGC ACCTTGTTATTATGGTTACAGCCTGCCTAGTTGAAAGGAAAAGGCTTACTGTTGCTAGAGAACACAAAACACTGGGCAGATATGATGAAGTGCCTCTCAG CATTTTTGTCCTATTGCCCCAGTTTGCTCTGGTGGGGATTGCTGATTGTTTCCTTGAAGTTGCCAAACTGGAATTCTTCTATGACCAGGCACCAGAAGGG ATGAAGAGTCTGGGGACCTCTTATTTCTCAAGTGGCATTGGACTTGGACAGTTCTTTAGCAGTTTTCTTCTGGCAATGGTTTCTGATATCACCAAGAAGA ATGGGCACAATGGATGGGTTCTGGACAATCTGAATATCTCTCGTCTCGATTATTACTACGCATTCTTAGGTCTGACTGATGAAGGTCATGATTATACAGA GGATGGGACTGTTGATCTCAAGGGCAAGCCTGTTTACAGGTCCAAAACTGGGAGGTGGAAAGCTTGTTCCTTCGTCGTCGGCTATGAAGTGTTTGAAAGA ATGGCATATTATGGAATAGCATCAAACCTGGTGTTATACTTGAGACACAAGCTTCATGAAGGCACAGTATCGTCTTCAAACCACGTCACCAACTGGGTTG GTACTGTATGGATGCTGCCCGTTTTCGGTGCTTACGTTGCAGATGCTCGCCTTGGTAGGTACTGGACCTTTGTCATTGCCTCCGCCATCTATCTCATGGG AATGACCCTATTGACACTATCAGTTTCGGTACCGGGACTGAAGCCTCCATCATGTGGTGGTAATATCAAAGAAGAGGACTGCCCTTTAAGGGCCTCTAAT GTTCAGAGGGGAGTCTTCTACACAGCTTTGTACATCATTGCAGTCGGAACAGGTGGGACCAAGCCCAACATTTCGACAATTGGAGCAGACCAGTTCGACG AGTTTGAACCGAAAGAGAAGAAGAGCAAGCTGTCTTTCTTCAACTGGTGGATGTTCAGCATTTTCTTTGGGACTTTGTTCTCAAACACCTTTCTGGTTTA CATTCAAGACAATGTGAGCTGGACAGTCGGATACGCTCTTCCAACTGCGGGACTAGCGATCTCGATTGCTATCTTTTTAGTTGGAACACCATTCTACAGA CACAAAATCCCTGCTGGCAGTCCTTTCACCAAGATGGCTCAAGTCTTTGTCGCTGCTTCCCGGAAAAGGAATGTGTGTATCCCAAGTGATCCATCTGACT TGCATGAACTCGGGTTGGAGGAGTACTCAAGAGCAGGAAAGTTTCAGGTTTATCATACTGCTTCTTTAAGTTTTCTTGACAAAGCTGCGGTGAAGAACAA ATCAGGCTCACCATGGATGTTATGTCCTGTTACTCAAGTTGAAGAAACAAAACAAATGATCCAGCTTCTCCCCGTGTTCATTGCCACAATTGTACCCAGC ATCATCATTGCTCAAATAAACACCTTGTTTATTCAGCAAGGAACCACTCTGGAAAGAAGCATGGGACCAAATTTCGACATCCCTCCAGCCTGCCTAACCG CATTTGTCACCATATCTATGCTCATCTCCCTTGTTATCTATGACAGCGTCCTAGTCCCAGCTTCCAGGCGATACACGAAAAATCCAAGAGGGATCAGTCT ACTGCAGAGAATGGGAATCGGCCTTTTGTTGCAGATCATCACAGTTGCGGCTGCCTGTTTGGCAGAGAGAAGAAGGCTCAGTGTAATTAGGGAACATAAC CTCACTGGCAAACATGACAAGTTGCCTCTCACCATCTTTATCCTACTGCCGCAGTTTGTGCTCATGGGGGTTGCTGATGCATTCGTTGAAGTTGCGAGAA TCGAGTTCTTCTACGATCAAGCACCGCAAGGGATGAAGAGCCTTGGAACCTCATACTTCACCTCTGGGTTGGGAATTGGGAATTTCATGAGTAGTGTTCT TCTAAGAACAGTTGCTAATGTTACAAAGAAACATGCCAGAAGAGGGTGGATCCTGGATAACCTGAATCTCTCCCATTTGGATAAATACTATGCACTTTTG GCTATCCTTAGCATCATCAACTTGTTCTACTTTCTTATAGTTTCCAAGTTCTACGTGTATAGTGCAGATATAAGCTGTAGAGGAAAGGAATCTGATGAAG CGAACGAGAACTCGCTACAGTGA
AA sequence Show only first row Show all	>Lus10008232 pacid=23164939 polypeptide=Lus10008232 locus=Lus10008232.g ID=Lus10008232.BGIv1.0 annot-version=v1.0 MEKLEENGPPKEGNSEAYTRDGTVDHRRKPVLRSRSGGWKACSFFLAYEVFERMAFYGIASNLVVYLSEKLHEGTVKSSNNVTTWTGTVWMFPIIGAYIA DAHLGRYWTFLIAAALYLSGMSLLTLTVSVPGLKPPSCDHGIGGCDKSVSSFQKGIFYLALYAVAAGAGGTKPNISTMGADQFDDSEPKERQYKLSFFNW WFFGSFFGALISNSLLIYIQDNVGWSLGYGLPTLGLAVSIGLFLIGTPFYRHKLPVGSPFTKIARVLIAAVRKWRMPVPDDPKQLYELGLDEYSRADKYR IDHTNSLSCSFCRFLDKAAVKIGSSSTWMLCSVTQVEETKQIIKMVPVLAVTIIPNTIIAQMNTLFIKQGTTLNRSWGPHFHIPSACLTAFVTIFMLVSL IVYDRWFMPFVKRYTKNPRGITLLQRMAIGLFLHLVIMVTACLVERKRLTVAREHKTLGRYDEVPLSIFVLLPQFALVGIADCFLEVAKLEFFYDQAPEG MKSLGTSYFSSGIGLGQFFSSFLLAMVSDITKKNGHNGWVLDNLNISRLDYYYAFLGLTDEGHDYTEDGTVDLKGKPVYRSKTGRWKACSFVVGYEVFER MAYYGIASNLVLYLRHKLHEGTVSSSNHVTNWVGTVWMLPVFGAYVADARLGRYWTFVIASAIYLMGMTLLTLSVSVPGLKPPSCGGNIKEEDCPLRASN VQRGVFYTALYIIAVGTGGTKPNISTIGADQFDEFEPKEKKSKLSFFNWWMFSIFFGTLFSNTFLVYIQDNVSWTVGYALPTAGLAISIAIFLVGTPFYR HKIPAGSPFTKMAQVFVAASRKRNVCIPSDPSDLHELGLEEYSRAGKFQVYHTASLSFLDKAAVKNKSGSPWMLCPVTQVEETKQMIQLLPVFIATIVPS IIIAQINTLFIQQGTTLERSMGPNFDIPPACLTAFVTISMLISLVIYDSVLVPASRRYTKNPRGISLLQRMGIGLLLQIITVAAACLAERRRLSVIREHN LTGKHDKLPLTIFILLPQFVLMGVADAFVEVARIEFFYDQAPQGMKSLGTSYFTSGLGIGNFMSSVLLRTVANVTKKHARRGWILDNLNLSHLDKYYALL AILSIINLFYFLIVSKFYVYSADISCRGKESDEANENSLQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10008232 [exp]	0	1
AT3G51490		TMT3	tonoplast monosaccharide trans...		Lus10010886 [exp]	8.3	0.5908
AT1G78690			Phospholipid/glycerol acyltran...		Lus10003105 [exp]	10.2	0.5865
AT3G22640		PAP85	cupin family protein (.1)		Lus10042617 [exp]	13.1	0.6222
AT2G39570		ACR9	ACT domain repeats 9, ACT doma...		Lus10001702 [exp]	91.8	0.5320
AT5G09220		AAP2	amino acid permease 2 (.1)		Lus10027109 [exp]	113.7	0.5131
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Lus10015742 [exp]	165.4	0.5531
AT5G17390			Adenine nucleotide alpha hydro...		Lus10007982 [exp]	208.0	0.5120

Compare expression of checked genes

Lus10008232 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.