Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019772 [exp] 221 / 2e-63 AT5G50400 287 / 2e-84 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10025569 [exp] 208 / 1e-62 AT5G06600 149 / 7e-39 ubiquitin-specific protease 12 (.1.2.3) Lus10017291 [exp] 184 / 1e-53 AT5G06600 100 / 3e-22 ubiquitin-specific protease 12 (.1.2.3) Lus10013548 [exp] 177 / 1e-51 AT5G06600 55 / 3e-08 ubiquitin-specific protease 12 (.1.2.3) Lus10022893 [exp] 171 / 9e-51 ND / Lus10027030 [exp] 170 / 3e-49 AT5G06600 120 / 8e-30 ubiquitin-specific protease 12 (.1.2.3) Lus10017290 [exp] 168 / 6e-49 ND / Lus10024932 [exp] 166 / 7e-49 ND / Lus10041636 [exp] 164 / 5e-48 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008233 pacid=23164942 polypeptide=Lus10008233 locus=Lus10008233.g ID=Lus10008233.BGIv1.0 annot-version=v1.0 ATGACGACGACGCTGGCGGGTTTGCCCAAGTACGTGGTGCTCCGGTCAAAATCAGTCGGCAAATACGTGCACTACCTATGGAACGAGGAGGAGTTCGGGG ACTACTACAGGTGCTTGGGCTGCAAGAAAGAAATGGATCCGACCAGCCCATTTTTGAAGTTAGAAGTGGTCAATGCTCCCTCCGACCCACCCAACTTCGT CCACCTCCGCTGCTCTTACTCCAACAAGTACTTGAAGCTGGTGGCGGTAAACGGCGGGCTGCTGGCCGTATCCGCGACCGCGGACGAGCCGGACTTTGAA AACGGGTCCACCTTGTTCCTAGCGGTTTTCCCTGATGATGAGGGTCCGAATACGGTTGGGTTTACCCACGTGGCGACGGAGTTCGTGGTGACGGTCAACG TGGATGGTAGTAAGGCGGAAGCGAACGGTGTCGTTTGCATGTCGAATGACGGCGACGTTGACCACATGCATCGTTTCGAGTTCGGCCCTTGGGTGGGGGA AGGAGGGGATGCTGCCAGGGGATGTAGCTGCTTTGTTCCAATAAAAGACCTTTGTCGTAAAGGATACCTTGTTAATGATACCCTCGTGATTGAAGCTCAT GTTTCTACCATAGCTATAACATCAGAAGATGAGGCAAACGGAAACACCAACAGTTCCTTATTCTCCGCATCAAGTCTGCAATTAACCACTCGTAGCCTGA TTGCAGAACTTTCAGCAATGACTATTAATGACAACTGCTCTTCTCCAGGAAATGGAACTATCTTGCTGGAACAACCAAGGGAGAGACTCGACATGCTCTT CGAGATGTCACTTGCGTTTCTATGTCGAACCAAATCACTCGACGAAGTCGAAAACATTGCTTGTGAAATTCTTTCCCTGACACTTGATGATCCTGTTCAG AAGACTATTTTGGAAGACTTGATCTCACTCCTGGCTGAGTTTAAGGAGACCGTTCCTAGCTCTATCTCAACTATCGAAACAAGCCTTGCTATTGAAACAT CTATGGCCCAGATGACCAAGGATTTCGATGAGAGGTTGGCTTACAGGAAGGGGCAACTGACATATCTGGAGGCAGACGCTTCTAGGCTCGGGGAAGAATG CTCAAAGCTGGAGGCTGGAATTCAGCATTTGTCTGCTCGCAAGGCCAAGATTCCGAAACACCTAAATTATAGTGCGGTCCAACTTGAGAAGGAAAACCAG GAGGCTTCCATGGAACTTGCTGAACGGAAGAAATATTTTTCCAGAGGAAGGACGCATGTGAAAAGCAGATGA
AA sequence Show only first row Show all	>Lus10008233 pacid=23164942 polypeptide=Lus10008233 locus=Lus10008233.g ID=Lus10008233.BGIv1.0 annot-version=v1.0 MTTTLAGLPKYVVLRSKSVGKYVHYLWNEEEFGDYYRCLGCKKEMDPTSPFLKLEVVNAPSDPPNFVHLRCSYSNKYLKLVAVNGGLLAVSATADEPDFE NGSTLFLAVFPDDEGPNTVGFTHVATEFVVTVNVDGSKAEANGVVCMSNDGDVDHMHRFEFGPWVGEGGDAARGCSCFVPIKDLCRKGYLVNDTLVIEAH VSTIAITSEDEANGNTNSSLFSASSLQLTTRSLIAELSAMTINDNCSSPGNGTILLEQPRERLDMLFEMSLAFLCRTKSLDEVENIACEILSLTLDDPVQ KTILEDLISLLAEFKETVPSSISTIETSLAIETSMAQMTKDFDERLAYRKGQLTYLEADASRLGEECSKLEAGIQHLSARKAKIPKHLNYSAVQLEKENQ EASMELAERKKYFSRGRTHVKSR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10008233 [exp]	0	1
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10019926 [exp]	2.8	0.9476
					Lus10000100 [exp]	3.7	0.9503
AT1G19630		CYP722A1	"cytochrome P450, family 722, ...		Lus10025991 [exp]	6.2	0.9411
AT1G19630		CYP722A1	"cytochrome P450, family 722, ...		Lus10025990 [exp]	6.6	0.9403
AT4G25150			HAD superfamily, subfamily III...		Lus10006849 [exp]	7.4	0.9323
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10016223 [exp]	8.8	0.9371
AT2G47460	MYB	PFG1, ATMYB12	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10001458 [exp]	14.0	0.9259
AT1G16310			Cation efflux family protein (...		Lus10001768 [exp]	17.2	0.9401
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Lus10012312 [exp]	17.7	0.9368
AT5G15920		EMB2782, SMC5	EMBRYO DEFECTIVE 2782, structu...		Lus10005338 [exp]	17.9	0.9366

Compare expression of checked genes

Lus10008233 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.