Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04010 991 / 0 ATPSAT1 phospholipid sterol acyl transferase 1 (.1) AT5G13640 81 / 2e-15 PDAT1, ATPDAT PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) AT3G44830 63 / 4e-10 Lecithin:cholesterol acyltransferase family protein (.1) AT1G27480 47 / 3e-05 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003615 [exp] 1281 / 0 AT1G04010 1005 / 0.0 phospholipid sterol acyl transferase 1 (.1) Lus10024927 [exp] 1184 / 0 AT1G04010 1021 / 0.0 phospholipid sterol acyl transferase 1 (.1) Lus10021564 [exp] 89 / 6e-18 AT5G13640 989 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Lus10015639 [exp] 86 / 4e-17 AT5G13640 1053 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Lus10017165 [exp] 84 / 1e-16 AT5G13640 991 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Lus10037657 [exp] 83 / 4e-16 AT5G13640 1049 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Lus10019519 [exp] 73 / 4e-13 AT3G44830 923 / 0.0 Lecithin:cholesterol acyltransferase family protein (.1) Lus10018664 [exp] 46 / 9e-05 AT1G27480 491 / 5e-173 alpha/beta-Hydrolases superfamily protein (.1) Lus10007728 [exp] 45 / 0.0002 AT1G27480 484 / 3e-170 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G195500 [exp] 1108 / 0 AT1G04010 1040 / 0.0 phospholipid sterol acyl transferase 1 (.1) Potri.001G171000 [exp] 84 / 2e-16 AT5G13640 1055 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Potri.003G063100 [exp] 81 / 9e-16 AT5G13640 1077 / 0.0 PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1, ARABIDOPSIS THALIANA PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE, phospholipid:diacylglycerol acyltransferase (.1) Potri.004G190100 [exp] 62 / 1e-09 AT3G44830 911 / 0.0 Lecithin:cholesterol acyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF02450 [flax] [poplar] LCAT Lecithin:cholesterol acyltransferase
Representative CDS sequence Show only first row Show all	>Lus10008234 pacid=23164940 polypeptide=Lus10008234 locus=Lus10008234.g ID=Lus10008234.BGIv1.0 annot-version=v1.0 ATGGACGGACGACCTATTCTTCTCCCCTTCGCCATCGCCGTGCTATTAGTTGCCGGTCTTGGAACCACCAATGGCGTCGAGTTCGACGGAGACTACTCCA AGCTGTCAGGGATCATAATCCCTGGATTTGCATCCACTCAGCTCAGAGCATGGTCATTACTCGACTGTCCTTACTCGCCCCTCGATTTCAACCCTCTCGA CTTGGTCTGGCTCGACACTACCAAGCTTCTTTCTGCTGTGAATTGCTGGCTCAAGTGCATGTTGCTAGATCCTTACAACCAAACTGATCATGCGGAGTGT AAGTCAAGGCCTGATAGTGGTCTCTCTGCAATCACTGAACTCGATCCAGGATATATTACAGGTCCACTTTCATCAATATGGAAAGAATGGATTAAGTGGT GCATCCAATTCGGTATCGAGGCAAATGCGATAATTGCTGTTCCATATGATTGGAGAATGTCACCATCAATGCTTGAGGAGCGAGACCTCTATTTTCATAG CCTCAAATTGACCTTTGAAACAGCCCTCAAACTTCGTGGTGGGCCGTCTTTGGTATTTGGTCATTCGTTGGGGAACCTTGTATTCCGATATTTTCTAGAG TGGCTGAAGCTAGAAATTGCCCCGAAACATTACAATCAATGGCTGGATGACCACATTCATGCTTACTTTGCTGTTGGAGCTCCTCTTCTTGGTTCGCCTG AGACAGTGAAAGCTTCTCTTTTTGGAAACACATTTGGGCTTCCTGTTTCTGAGGTGTTAAAGTGTCGTACTATCTTGTGCTGGTGTGTCTCAAAAGTTAT TCTAACTCATGTTTATACTTTGGCAAGGTCTCAGGGAACAGCTCGATTAATGTTCAATTCTTTTGCTTCATCGTTGTGGATGTTGCCTCTTTCAAAGTAT TGTAGATCTGACAATCCATATTGGAAATATTTTTCTGGAGGATTCAGAATGAATAATCACACGTATAATTGTGAGGAGAAAGAATATCAATCCAACTACT CTGGGTGGCCGACCAACGTGGTCAATATTGAAATCCCTTCTGTCCCTGGATTTGATGCCTATCCATCACTCTCAGAGATGGTTGAAACAAACTTCTCTGG AATGGAGTGTGGACTCCCTACTCAGTTATCTTTCTCAGCTCGTGAAGTTGCTGATGGAACGCTTTTCAGAGCCATAGAGGATTATGATTCGGACAGCAAG AGGCTTTTATTCCAATTACAGAAGGCATACCATGGTGATCCTGTTGTGAATCCTCTTACCCCCTGGGACCGACCTCCAATTAAAAATATTTTCTGCATCT ATGGAGTAGATTTAAAGACAGAGGTTGGTTACTATTTTGCACCAAGTGGCAAGCCTTACCCAGATAATTGGATCATAACAGATGTTATTTATGAAATTGA AGGATCCCTCTACACAAGGCATGTATTATTACTGTCTGGGAATCTAGTGGAAGGGAATCCAGGAGCTACAAGTGGGGATGAGACGGTACCATACAATTCC TTATCTCTATGCAAGAGTTGGCTTGGACCAAAAGTCAACATAACACGGGCTCCCCAGTCCGAACATGATGGATCTGATGTACAAATCAAACTGAATGTCG ACCATCACCCGGAAGAAGATATAGTTCCCAACATGACAAGGTCTCCGAGGGTAAAATATATTACATACTATGAAGATTCCGAGAGCCTCGCAGGGAAGAG GACAGCAGTTTGGGAACTTGACAAAGCAAATCACAGGAACATTGTAAGATCTCCCGTTTTAATGCGGGAGTTGTGGCTTCAGATGTGGCATGACCTCCAT TCAGATAAAACATCAAAATTTGTTATGAAATCTAAGCGAGGTCCCCTAAGAGACGATGATTGCTATTGGGACTACGGTAAAGCTCGGTGTGCGTGGTCTG AATACTGCGAATATAGATACCTTTTTGGTGATGTTCACTTAGGACAGAGCTGTAGATTGAAGAATTCTTCGGCTGAGACGCTCTTGAATTACCTGTAA
AA sequence Show only first row Show all	>Lus10008234 pacid=23164940 polypeptide=Lus10008234 locus=Lus10008234.g ID=Lus10008234.BGIv1.0 annot-version=v1.0 MDGRPILLPFAIAVLLVAGLGTTNGVEFDGDYSKLSGIIIPGFASTQLRAWSLLDCPYSPLDFNPLDLVWLDTTKLLSAVNCWLKCMLLDPYNQTDHAEC KSRPDSGLSAITELDPGYITGPLSSIWKEWIKWCIQFGIEANAIIAVPYDWRMSPSMLEERDLYFHSLKLTFETALKLRGGPSLVFGHSLGNLVFRYFLE WLKLEIAPKHYNQWLDDHIHAYFAVGAPLLGSPETVKASLFGNTFGLPVSEVLKCRTILCWCVSKVILTHVYTLARSQGTARLMFNSFASSLWMLPLSKY CRSDNPYWKYFSGGFRMNNHTYNCEEKEYQSNYSGWPTNVVNIEIPSVPGFDAYPSLSEMVETNFSGMECGLPTQLSFSAREVADGTLFRAIEDYDSDSK RLLFQLQKAYHGDPVVNPLTPWDRPPIKNIFCIYGVDLKTEVGYYFAPSGKPYPDNWIITDVIYEIEGSLYTRHVLLLSGNLVEGNPGATSGDETVPYNS LSLCKSWLGPKVNITRAPQSEHDGSDVQIKLNVDHHPEEDIVPNMTRSPRVKYITYYEDSESLAGKRTAVWELDKANHRNIVRSPVLMRELWLQMWHDLH SDKTSKFVMKSKRGPLRDDDCYWDYGKARCAWSEYCEYRYLFGDVHLGQSCRLKNSSAETLLNYL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04010		ATPSAT1	phospholipid sterol acyl trans...		Lus10008234 [exp]	0	1
AT5G14850			Alg9-like mannosyltransferase ...		Lus10033296 [exp]	3.0	0.8104
AT5G60040		NRPC1	nuclear RNA polymerase C1 (.1....		Lus10013536 [exp]	4.0	0.7649
AT5G45140		NRPC2	nuclear RNA polymerase C2 (.1)		Lus10017504 [exp]	7.1	0.7635
AT5G24670		TAD3, EMB2820	tRNA adenosine deaminase 3, EM...		Lus10016480 [exp]	8.2	0.7875
AT1G12930			ARM repeat superfamily protein...		Lus10012590 [exp]	8.4	0.7856
AT4G15570		MAA3	MAGATAMA 3, P-loop containing ...		Lus10015030 [exp]	8.8	0.7805
AT3G28030		UVR1, UVH3	UV REPAIR DEFECTIVE 1, ULTRAVI...		Lus10039424 [exp]	10.9	0.7991
					Lus10036475 [exp]	13.7	0.7624
AT1G52155			unknown protein		Lus10025835 [exp]	19.0	0.7641
AT4G31770		ATDBR1	ARABIDOPSIS THALIANA DEBRANCHI...		Lus10026902 [exp]	19.9	0.7293

Compare expression of checked genes

Lus10008234 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.