Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01150 60 / 1e-11 RHA2B RING-H2 finger protein 2B (.1) AT1G15100 57 / 1e-10 RHA2A RING-H2 finger A2A (.1) AT5G20885 54 / 4e-09 RING/U-box superfamily protein (.1) AT3G62690 53 / 1e-08 ATL5 AtL5 (.1) AT3G60966 52 / 1e-08 RING/U-box superfamily protein (.1) AT3G19950 52 / 2e-08 RING/U-box superfamily protein (.1) AT3G10910 50 / 4e-08 RING/U-box superfamily protein (.1) AT5G01880 50 / 4e-08 RING/U-box superfamily protein (.1) AT2G42360 50 / 9e-08 RING/U-box superfamily protein (.1) AT4G17245 50 / 9e-08 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003617 [exp] 206 / 9e-69 AT2G01150 63 / 6e-13 RING-H2 finger protein 2B (.1) Lus10019686 [exp] 80 / 5e-19 AT1G72310 62 / 1e-11 RING/U-box superfamily protein (.1) Lus10016427 [exp] 69 / 1e-14 AT1G72310 59 / 4e-11 RING/U-box superfamily protein (.1) Lus10019685 [exp] 66 / 1e-13 AT5G43200 62 / 4e-12 Zinc finger, C3HC4 type (RING finger) family protein (.1) Lus10016428 [exp] 64 / 4e-13 AT5G45290 59 / 2e-11 RING/U-box superfamily protein (.1.2) Lus10007936 [exp] 56 / 4e-10 AT2G01150 104 / 3e-29 RING-H2 finger protein 2B (.1) Lus10013475 [exp] 54 / 2e-09 AT2G01150 104 / 2e-29 RING-H2 finger protein 2B (.1) Lus10025612 [exp] 54 / 7e-09 AT1G60360 234 / 7e-75 RING/U-box superfamily protein (.1) Lus10000333 [exp] 53 / 2e-08 AT3G05200 309 / 2e-102 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G086300 [exp] 66 / 5e-14 AT1G15100 79 / 5e-19 RING-H2 finger A2A (.1) Potri.007G086100 [exp] 66 / 6e-14 AT2G01150 71 / 3e-16 RING-H2 finger protein 2B (.1) Potri.005G081200 [exp] 66 / 7e-14 AT1G15100 74 / 3e-17 RING-H2 finger A2A (.1) Potri.005G081300 [exp] 61 / 8e-12 AT2G01150 75 / 1e-17 RING-H2 finger protein 2B (.1) Potri.007G086200 [exp] 60 / 1e-11 AT1G15100 74 / 5e-17 RING-H2 finger A2A (.1) Potri.010G133300 [exp] 56 / 3e-10 AT3G61460 69 / 2e-15 brassinosteroid-responsive RING-H2 (.1) Potri.010G133200 [exp] 54 / 1e-09 AT3G61460 69 / 3e-15 brassinosteroid-responsive RING-H2 (.1) Potri.018G085001 [exp] 52 / 2e-08 AT4G28890 290 / 2e-94 RING/U-box superfamily protein (.1) Potri.019G130100 [exp] 52 / 2e-08 AT5G05280 129 / 5e-38 RING/U-box superfamily protein (.1) Potri.006G144200 [exp] 52 / 2e-08 AT5G17600 90 / 3e-21 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10008235 pacid=23164938 polypeptide=Lus10008235 locus=Lus10008235.g ID=Lus10008235.BGIv1.0 annot-version=v1.0 ATGGCGACACAAATAGTCTCAGATCTATACACCGTAGCCTTCTTCTTCTTCTTCAAGCTCCTCCTCCTCAAAATCTGGGTCGTCATCCGCTCCGCCTCCT CCAGACTGCAGATTAATAAGACCCAATTCCGCCATACCCTGTTCGGATCCATCGAAGACAAGTACCCGGCGACTCTGTACTACTCGTCGGAGAACCCGGC GGAGGAATGCGCGGTGTGTTTGTCGGAATTCAAGGAAGGCGAATTGGTGAGGCGGTTGAGTTGCAAGCATCTGTTCCACAGAGAGTGCGTGCCCGAATGG GGTAATGATGAGGAGGAGGAGGAGGACGGAGGGGGTAATTACGGGTTTTCATCATCGTGCCCTCTGTGCCGGAGCCAGCTGGCGGTTGCTCCACCGCGGC CGACGGGCGATTATGGGAGTAGTGATCAGTGGGGCATCAGCAGCTGTTGGTTTTGTTGGCTGCGTTCCGACGAGACGAGGCGGTGGTTCCAAGGTCGACG GAGATTACTACTAGCTAGTAGCTAG
AA sequence Show only first row Show all	>Lus10008235 pacid=23164938 polypeptide=Lus10008235 locus=Lus10008235.g ID=Lus10008235.BGIv1.0 annot-version=v1.0 MATQIVSDLYTVAFFFFFKLLLLKIWVVIRSASSRLQINKTQFRHTLFGSIEDKYPATLYYSSENPAEECAVCLSEFKEGELVRRLSCKHLFHRECVPEW GNDEEEEEDGGGNYGFSSSCPLCRSQLAVAPPRPTGDYGSSDQWGISSCWFCWLRSDETRRWFQGRRRLLLASS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20885			RING/U-box superfamily protein...		Lus10008235 [exp]	0	1
AT1G08350			Endomembrane protein 70 protei...		Lus10020613 [exp]	4.0	0.9183
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10008935 [exp]	8.5	0.9276
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10020865 [exp]	13.9	0.9169
AT1G02335		GL22	germin-like protein subfamily ...		Lus10020632 [exp]	17.8	0.9109
					Lus10018225 [exp]	20.0	0.9107
AT1G75490	AP2_ERF	DREB2D	Integrase-type DNA-binding sup...		Lus10010632 [exp]	20.9	0.7924
					Lus10038463 [exp]	22.0	0.9097
AT5G04870		AK1, ATCPK1, CP...	calcium dependent protein kina...		Lus10029358 [exp]	24.4	0.9094
AT5G06760		AtLEA4-5, LEA4-...	Late Embryogenesis Abundant 4-...		Lus10012018 [exp]	25.0	0.8435
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10028844 [exp]	25.6	0.9094

Compare expression of checked genes

Lus10008235 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.