Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28600 690 / 0 NPGR2 no pollen germination related 2 (.1) AT2G43040 479 / 5e-160 NPG1 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) AT1G27460 425 / 5e-139 NPGR1 no pollen germination related 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003618 [exp] 1341 / 0 AT4G28600 728 / 0.0 no pollen germination related 2 (.1) Lus10022897 [exp] 928 / 0 AT4G28600 736 / 0.0 no pollen germination related 2 (.1) Lus10024926 [exp] 911 / 0 AT4G28600 726 / 0.0 no pollen germination related 2 (.1) Lus10011793 [exp] 695 / 0 AT4G28600 751 / 0.0 no pollen germination related 2 (.1) Lus10023748 [exp] 694 / 0 AT4G28600 753 / 0.0 no pollen germination related 2 (.1) Lus10020725 [exp] 466 / 1e-154 AT2G43040 934 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10029803 [exp] 465 / 2e-154 AT2G43040 934 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10017638 [exp] 457 / 2e-151 AT2G43040 929 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10033595 [exp] 454 / 1e-150 AT2G43040 926 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G259300 [exp] 846 / 0 AT4G28600 751 / 0.0 no pollen germination related 2 (.1) Potri.008G169500 [exp] 729 / 0 AT4G28600 699 / 0.0 no pollen germination related 2 (.1) Potri.010G068700 [exp] 707 / 0 AT4G28600 708 / 0.0 no pollen germination related 2 (.1) Potri.002G055200 [exp] 499 / 7e-168 AT2G43040 1035 / 0.0 no pollen germination 1, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.014G016000 [exp] 454 / 3e-150 AT1G27460 841 / 0.0 no pollen germination related 1 (.1) Potri.002G118500 [exp] 438 / 6e-144 AT1G27460 868 / 0.0 no pollen germination related 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008236 pacid=23164945 polypeptide=Lus10008236 locus=Lus10008236.g ID=Lus10008236.BGIv1.0 annot-version=v1.0 ATGAGTAGAAATCATAAGCGGACTGTTAGGAGAGATTTGAGGAATATGATGAAGTGTTTCTGCTCCGGAGAGCAACTAGTTACAGCAGATGAATTGGGAC CCCAAGGACAAGGAGGAAGAGAATCTGGTTCTCTTACAGACAGGTTTTACTCTGCAACGAGTGCTCGCTCTAGAGGTAGCAAAAGTGGTAGCCATAAACC AGATCGCACTAACATTGAGGAAGCTGAATTATCTCTCCAGAAGCGTGGCTCCTTGAATAATGAGGAAGCTAGAGCATTGTTGGGGAGAGTTGAGTATCAG CAAGGAAATTTTGAAGCCGCGTTACATGTATTTGAAGGCATCAATGTTTCTGCAATCACTCCCAAAGTCAAGTTCAGTTTTGCTAGACACGGTGATCAAC TTAGAAGGCAGTCCCAGAACTCGGTGAAATCTCCGCTGTCTATACAGGCTGTCACCTTGCTGTTGGAAGCACTCTTTCTGAAAGCAAAATCCTTGCAGCA TCTCGGGAATTTTCGAGAAGCTGCTGAATCTTGCAAAACAGTTGTGGACATAGTCGAATCTTCCTTGCCAGAAGGTTTGCCTCGAAACTTTGCTGCTGAC GGTAAATTCCAGGAAATTGTAAGCAAGGCTGTTGAGTTACTTCCAGAGTTATCGAAACATGCAGATAACTCGCATGATACGATAGTGGCCTTCCGGAGGG CACTCCTTCATCGCTGGAACCTTGATGTCGAAACCACAGCAAGGATCCAAAGGGAGTTTGCAATTTTCCTTCTCTACAATGGCGGGGAAGCGAGTCCTCC AAACCTGCGCTTCCAGATGGATGGTTCTTTCGTGCCAAGAAATAATCTAGAAGAGGCCATACTGTTACTCATGATACTTTTAAGACAAATATCACTCAAG AAAATTGAATGGGATCCATCAATCTTGGACCATCTTCAATTTGCTCTCTCAGTGTCCGGGGATCTCTTAACATTAGGCAACCACATTGAGGAGTTGCCAC TGGGAATAATTAGTCAGAAGGAAATGTACTGTAATCTCGCGCTCTGTTATTACCACGAAGGGGAAGAACTGGTAGCTCTAAATCTACTCAAGAAGCTATT GCACAGCAGTGTAGATCCAAATTATGTTCCCGGTTTGCTAATGGCGTCTAAGATTTGCGGAACAACACCTCAGCTTGCAGCAGAAGGAATCGATTATGCT CGTAGAGCTCTCAAAAGTTCCAAAAATGGATGCCATCAGTTAGAAAGTACCGCCAATCTTCTGTTGGGAATATCCCTTTCCTCTTGTTCAAGGTCAACTT TTGCAGACTCTGAGAGGGTCTCCAAACAGTCCGAGTCACTAAAAGTCCTCGAAAGCGCCGCAAAAACGACGAATATGGAATGTGCTGATATTCTGTACCG TCTTAGCCTAGAAAATGCAGAGCAGAGGAAGTTGGATCGTGCACTTCATTACACAAAGAGGTGTTTAAAACGCGAAACTGGTTCTAGCATCCAAGGATGG TTGCTTTTGGCACGGATCTATTCAGCTCAGAAATGCTATTCTGATGCTGAAAATGTCATCACTGCTGCATTGGACCAGACTAGTAAATGGGATCAAGGAG AGCTTTTGAGAACTAAAGCTAAAATTCAGGTTGCACGACACCAAATCAAGAATGCCATTCAAACTTATACCCAACTTCTAGCTGTTCTTCAAGTTCAGAC CAAGACCTTTGGCACCGGAAAGAAACTACAGAAGACTGATGGAGTTCCTGCTAGAGCATTGGAATTGGAAGTTTGGCATGATTTGGCCTCTCTATACATA AGCCTATCCCGGTGGCATGATGCCGAGGTCTGCCTTTTGAAATCAAAAGCCATCCAGTCTTTCTCAGCCCCTCGATGTCATATCGTAGGAAGCCTATACG AAAAGAAAGGACTCCTGAAGGAAGCACTGAAGGCTTTCATAGCAGCGTTGAGCATTGACCCAGTCCATGTGGCGAGCTTAGTGTCGACAGCAGTTGTTCT TAGGAAGATAGGCGGCACATCGAATGAGGTACTGAGAAGCTTTTTAATGGGAGCTCTACGGATCGACAGGATGAATGTAAGGGCCTGGTACAACCTTGGT TTGGTTCAGAAAGAAGAGGGATCGCCTTCCTCACTGATGGAAGCGGCCGATTGCTTTGAAGCTGCCACCTTTCTTGAAGAAACAGAACCAGTTGAACCCT TTCAGACAAGATGA
AA sequence Show only first row Show all	>Lus10008236 pacid=23164945 polypeptide=Lus10008236 locus=Lus10008236.g ID=Lus10008236.BGIv1.0 annot-version=v1.0 MSRNHKRTVRRDLRNMMKCFCSGEQLVTADELGPQGQGGRESGSLTDRFYSATSARSRGSKSGSHKPDRTNIEEAELSLQKRGSLNNEEARALLGRVEYQ QGNFEAALHVFEGINVSAITPKVKFSFARHGDQLRRQSQNSVKSPLSIQAVTLLLEALFLKAKSLQHLGNFREAAESCKTVVDIVESSLPEGLPRNFAAD GKFQEIVSKAVELLPELSKHADNSHDTIVAFRRALLHRWNLDVETTARIQREFAIFLLYNGGEASPPNLRFQMDGSFVPRNNLEEAILLLMILLRQISLK KIEWDPSILDHLQFALSVSGDLLTLGNHIEELPLGIISQKEMYCNLALCYYHEGEELVALNLLKKLLHSSVDPNYVPGLLMASKICGTTPQLAAEGIDYA RRALKSSKNGCHQLESTANLLLGISLSSCSRSTFADSERVSKQSESLKVLESAAKTTNMECADILYRLSLENAEQRKLDRALHYTKRCLKRETGSSIQGW LLLARIYSAQKCYSDAENVITAALDQTSKWDQGELLRTKAKIQVARHQIKNAIQTYTQLLAVLQVQTKTFGTGKKLQKTDGVPARALELEVWHDLASLYI SLSRWHDAEVCLLKSKAIQSFSAPRCHIVGSLYEKKGLLKEALKAFIAALSIDPVHVASLVSTAVVLRKIGGTSNEVLRSFLMGALRIDRMNVRAWYNLG LVQKEEGSPSSLMEAADCFEAATFLEETEPVEPFQTR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28600		NPGR2	no pollen germination related ...		Lus10008236 [exp]	0	1
AT4G28600		NPGR2	no pollen germination related ...		Lus10003618 [exp]	1.0	0.9569
AT4G32250			Protein kinase superfamily pro...		Lus10002923 [exp]	2.6	0.8952
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10002257 [exp]	3.5	0.9119
AT1G14780			MAC/Perforin domain-containing...		Lus10041285 [exp]	6.3	0.8863
AT1G12360		KEU	keule, Sec1/munc18-like (SM) p...		Lus10032196 [exp]	6.7	0.9024
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Lus10013374 [exp]	8.5	0.8951
AT2G15900			Phox-associated domain;Phox-li...		Lus10023847 [exp]	8.9	0.8768
AT1G52320			unknown protein		Lus10025777 [exp]	9.2	0.8762
AT4G03030			Galactose oxidase/kelch repeat...		Lus10000704 [exp]	9.5	0.8656
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Lus10043381 [exp]	9.9	0.8886

Compare expression of checked genes

Lus10008236 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.