Plant FIBer expression Database

Lus10008237 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G04000 74 / 2e-17 unknown protein
AT5G44060 61 / 1e-12 unknown protein
AT3G23440 39 / 0.0002 EDA6, MEE37 MATERNAL EFFECT EMBRYO ARREST 37, embryo sac development arrest 6 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003619
[exp]
159 / 5e-51 AT5G44060 100 / 2e-27 unknown protein
Lus10011797
[exp]
47 / 2e-07 AT5G44060 85 / 1e-21 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G259400
[exp]
88 / 4e-23 AT1G04000 87 / 2e-22 unknown protein
Potri.010G068800
[exp]
54 / 7e-10 AT3G23440 94 / 5e-26 MATERNAL EFFECT EMBRYO ARREST 37, embryo sac development arrest 6 (.1)
PFAM info
Representative CDS sequence
>Lus10008237 pacid=23164928 polypeptide=Lus10008237 locus=Lus10008237.g ID=Lus10008237.BGIv1.0 annot-version=v1.0
ATGAACACCAAAACGATGCGTCTCCCTCCCCGGCGCAATTTGGCGTCAAACAAGCGTAAGGAAAGAGATGATCCCTCCGACTCTTACAAGCCGCCGACAC
CAGCGGCTCCACCTCCGCCACCGTTTGCCACAGTGAAGCCATTGGGTAAGCCGGTTACCGATCCGAACGGTTCGGATAAATTGGTCGAACCGGCCGGGTC
TAATAATCAGATTCTAGCCGGTTACTTAGCCCACGAGTTTCTTACAAAGGGCACACTCCTGGGTCAACCGTGGGACCCAAAAGAGAGCCTGCCCGTGCCC
TCCTCCGTAACCCTAGAAGGGAAGAAGCTGAAGCCGAGCCAGAGAGGGACAGCCGCCGCCGAGCCGATGATTGTTGAGGATAAAGAGAAGATGAGAGAGA
GGGGCGTGGGATGA
AA sequence
>Lus10008237 pacid=23164928 polypeptide=Lus10008237 locus=Lus10008237.g ID=Lus10008237.BGIv1.0 annot-version=v1.0
MNTKTMRLPPRRNLASNKRKERDDPSDSYKPPTPAAPPPPPFATVKPLGKPVTDPNGSDKLVEPAGSNNQILAGYLAHEFLTKGTLLGQPWDPKESLPVP
SSVTLEGKKLKPSQRGTAAAEPMIVEDKEKMRERGVG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G04000 unknown protein Lus10008237
[exp]
0 1
AT3G25780 AOC3, AOC2 allene oxide cyclase 3 (.1) Lus10017571
[exp]
3.6 0.8860
AT5G44060 unknown protein Lus10003619
[exp]
5.7 0.8637
AT3G61460 BRH1 brassinosteroid-responsive RIN... Lus10014758
[exp]
6.3 0.8689
AT3G18490 Eukaryotic aspartyl protease f... Lus10042978
[exp]
8.9 0.8637
AT4G30440 GAE1 UDP-D-glucuronate 4-epimerase ... Lus10015496
[exp]
16.7 0.8489
AT2G43060 bHLH AtIBH1, bHLH158 ILI1 binding bHLH 1 (.1) Lus10025511
[exp]
18.3 0.8467
AT5G11770 NADH-ubiquinone oxidoreductase... Lus10014530
[exp]
19.9 0.8044
AT2G18910 hydroxyproline-rich glycoprote... Lus10006958
[exp]
21.8 0.8102
AT4G38660 Pathogenesis-related thaumatin... Lus10041899
[exp]
23.5 0.8146
AT3G23820 GAE6 UDP-D-glucuronate 4-epimerase ... Lus10016640
[exp]
26.8 0.8328

Lus10008237 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.