Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28570 848 / 0 Long-chain fatty alcohol dehydrogenase family protein (.1) AT3G23410 810 / 0 ATFAO3 ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, fatty alcohol oxidase 3 (.1) AT1G03990 746 / 0 Long-chain fatty alcohol dehydrogenase family protein (.1) AT4G19380 511 / 1e-171 Long-chain fatty alcohol dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003621 [exp] 1452 / 0 AT4G28570 853 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10022903 [exp] 1036 / 0 AT4G28570 837 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10024922 [exp] 1028 / 0 AT4G28570 833 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10035673 [exp] 532 / 1e-179 AT4G19380 793 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10011800 [exp] 515 / 5e-178 AT3G23410 527 / 0.0 ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, fatty alcohol oxidase 3 (.1) Lus10037257 [exp] 517 / 2e-174 AT4G19380 765 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10021165 [exp] 146 / 1e-39 AT4G28570 148 / 8e-41 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10011801 [exp] 0 / 1 AT4G28570 243 / 3e-74 Long-chain fatty alcohol dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G069100 [exp] 837 / 0 AT3G23410 851 / 0.0 ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, fatty alcohol oxidase 3 (.1) Potri.008G169300 [exp] 810 / 0 AT3G23410 855 / 0.0 ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, fatty alcohol oxidase 3 (.1) Potri.004G234900 [exp] 508 / 2e-169 AT4G19380 864 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Potri.002G259700 [exp] 380 / 2e-123 AT1G03990 300 / 5e-93 Long-chain fatty alcohol dehydrogenase family protein (.1) Potri.006G210150 [exp] 47 / 7e-05 AT4G28570 51 / 4e-06 Long-chain fatty alcohol dehydrogenase family protein (.1) Potri.006G210325 [exp] 47 / 8e-05 AT1G03990 67 / 4e-11 Long-chain fatty alcohol dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05199 [flax] [poplar] GMC_oxred_C GMC oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF00732 [flax] [poplar] GMC_oxred_N GMC oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10008239 pacid=23164926 polypeptide=Lus10008239 locus=Lus10008239.g ID=Lus10008239.BGIv1.0 annot-version=v1.0 ATGAAGGAAACAATGGAGGGAAAAACAGAGATTTGTCAGTCAAATACCTTACTGAGAGGAAGCAGTAGTTCTTACAGCCATGGATTCAGTCCTGATCAGA TGCAATCCCTTTCAGCCATCTGTGAATCCTTTTTACCTCCATTGACACTCTCAGAAAAAGATGGAATCCTGAAAGGAATCCCATTTGACAGGCAGCAAGC TCTTCTTTCCTTCTGTGAAGCTTCTGGCTCTGACGCACCAATTCCTGATGAGGTGGCAGAATTAATGGTGAAGAGAAACACCCCAGAAGGAGTGTTGCTA ATGAAGCTAGCTTTCAAGCTCCTCTCTTCCAGATTTGGTACACTGTTGCTTGCTGGGGTTTCTAGTCTGGACTGGAAATGGCCATTCATCCACAACTTCT CTGAACTCCCTCTGGAGAAGAGAGAACAAATCCTCAGGAAATGGAGAGGAGAGAAATTGTTCACACCTCTCAGAGTTGTTTTCGCCATGACCAAAGTCTT CTCCTTGTTCGTCTTCTTCTCCAGGATTGATGAAACTCTCAAGAACCCAGCTTGGGAAGCAATTGGATATCGAGTAGATGACGCCAGGAAATGTACGAGC AAAACGAAAAGAGAGAGACCTCTAGAGAAAGGGATAGTGGAGACAATTCATGGAGATGATTTTACCGGTTTTATCCAATCTCTCGTCGAAAAGGGCCTTC AGGTTGTCCAAGATGAAGAACATGACACAGTCAAGATAAGATGTGATGCTGTAATTGTTGGCTCAGGTTGCGGTGGAGGAGTTGCAGCTGCAATCCTTGC AAGGTCAGGATTGAAAGTGATCGTCTTGGAGAAAGGAAACTACTTTACCTCTGAGGACTACTCCTTACTCGAAGGGCCTTCGTTGGAGGAGCTATACGAG CGTGGAGGGAAAATGTCGACTAGTAACGGGGAGACCTCGATCTTAGCTGGATCGACAGTCGGTGGGGGAACTGCTGTCAACTGGTCTGCATGCATCAAGA CTCCTGATTCTGTTCTCAGAGATTGGTCTGTGGATCACAAGCTTCCGCTTTTCGGAAGCTTGGAGTACCGAGAAGCCGTGGAAGCTGTGTGGAAGAGAAT TGGGGTAACGGATAACTGTAAAGAGGAAGGGTTCCAGAACAAGGTCCTCAGGAAAGGCTGCGAGAATCTCGGTCTGAAAGTCGAACCGGTGTCGAGGAAT TCATCTGAAGATCATTACTGTGGATCGTGCAGCTATGGATGTAGAACGGGAGACAAGAGAGGGACTGACACAACCTGGCTGGTTGATGCCGTGAAGAACG ATGCTGTGATCATAACAGGATGCAAAGCCGAGCAATTCGTATTGGCAGATGATGATGGCGGAAGGAAGAAGAGATGCTTGGGAGTGGTTGCTAGATCTTT GAACCCGAAGCTCGAGAAGAAGAAGCTGCATATCGAAGCTCAAGTGACAGTTTCAGCTGGTGGGGCTCTTTTGACGCCTCCACTGATGATTGCCAGTGGC CTGAAGAACCCTCACATTGGGAACAACCTTCACCTCCACCCAGTGCTGATGGCATGGGGATATTTCCCAGAACAAGGATCTCCAAACTTCAAGGGCAAGA TGTATGAAGGAGGAATCATCACTTCCATCCATAAGATGGAATCCTCAGACGACTCTTCCAACAACACCACTGCCATCATAGAATGTGCAACTGTCGGGCC TGCCTCGTATGCCGCATCCTCTCCATGGACCTCAGGACGGGACCTGAAAGAAAAGATGGTCAAGTATCCAAGAACAGCAGTGCTTTTCGCGCTCGTGAGG GATCGAGGCTCGGGGGAAGTGAAGGTAGAAGGAAAGATATCTCACCAGCTAGACAAACAGGACAAGGAGAATCTCAGAACGGGGTTGAGACAGGTGTTGA GGATCCTGGTCGCAGCTGGAGCAGCCGAAGTAGGAACTTACCGCAGCGATGGCCAGAGGATTAAATGCCAAGGGATGACGGAGAAGGATTTCGAGCTGTT CTTGGATAGTGTTGTAGTGAACGGAGGAGGATTACAGTCCACTGATACTAACTGGATGGCATTCTTCTCAGCACACCAAATGGGAAGTTGCAGGATGGGA GCCACGGAAGAAGATGGCGGAGTTGACGAAAATGGAGAGAGCTGGGAAGCCAAAGGTTTATTTGTTTGCGACGGAAGCCTGCTTCCGAGCGCAATCGGAG TGAATCCCATGGTCACCATTCAGTCCACAGCATTCTGCATTGCCAACAGGATAGCTGAATCACTCAAGAAACGAAGATAA
AA sequence Show only first row Show all	>Lus10008239 pacid=23164926 polypeptide=Lus10008239 locus=Lus10008239.g ID=Lus10008239.BGIv1.0 annot-version=v1.0 MKETMEGKTEICQSNTLLRGSSSSYSHGFSPDQMQSLSAICESFLPPLTLSEKDGILKGIPFDRQQALLSFCEASGSDAPIPDEVAELMVKRNTPEGVLL MKLAFKLLSSRFGTLLLAGVSSLDWKWPFIHNFSELPLEKREQILRKWRGEKLFTPLRVVFAMTKVFSLFVFFSRIDETLKNPAWEAIGYRVDDARKCTS KTKRERPLEKGIVETIHGDDFTGFIQSLVEKGLQVVQDEEHDTVKIRCDAVIVGSGCGGGVAAAILARSGLKVIVLEKGNYFTSEDYSLLEGPSLEELYE RGGKMSTSNGETSILAGSTVGGGTAVNWSACIKTPDSVLRDWSVDHKLPLFGSLEYREAVEAVWKRIGVTDNCKEEGFQNKVLRKGCENLGLKVEPVSRN SSEDHYCGSCSYGCRTGDKRGTDTTWLVDAVKNDAVIITGCKAEQFVLADDDGGRKKRCLGVVARSLNPKLEKKKLHIEAQVTVSAGGALLTPPLMIASG LKNPHIGNNLHLHPVLMAWGYFPEQGSPNFKGKMYEGGIITSIHKMESSDDSSNNTTAIIECATVGPASYAASSPWTSGRDLKEKMVKYPRTAVLFALVR DRGSGEVKVEGKISHQLDKQDKENLRTGLRQVLRILVAAGAAEVGTYRSDGQRIKCQGMTEKDFELFLDSVVVNGGGLQSTDTNWMAFFSAHQMGSCRMG ATEEDGGVDENGESWEAKGLFVCDGSLLPSAIGVNPMVTIQSTAFCIANRIAESLKKRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28570			Long-chain fatty alcohol dehyd...		Lus10008239 [exp]	0	1
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10010856 [exp]	1.0	0.9147
AT4G36040		J11	DnaJ11, Chaperone DnaJ-domain ...		Lus10025060 [exp]	2.0	0.8942
AT2G47910		CRR6	chlororespiratory reduction 6 ...		Lus10038104 [exp]	4.9	0.8643
AT1G25440	CO	COL16	B-box type zinc finger protein...		Lus10041449 [exp]	8.2	0.8604
AT2G28840		XBAT31	XB3 ortholog 1 in Arabidopsis ...		Lus10040829 [exp]	8.4	0.8024
AT1G25440	CO	COL16	B-box type zinc finger protein...		Lus10034322 [exp]	10.9	0.8262
AT2G47210	MYB		myb-like transcription factor ...		Lus10034713 [exp]	11.0	0.8448
AT1G50600	GRAS	SCL5	scarecrow-like 5 (.1)		Lus10003773 [exp]	11.4	0.8032
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Lus10011443 [exp]	12.4	0.8098
AT3G16350	MYB		Homeodomain-like superfamily p...		Lus10038279 [exp]	13.1	0.7528

Compare expression of checked genes

Lus10008239 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.