Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004531 [exp] 478 / 2e-169 AT2G24430 50 / 2e-06 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Lus10007204 [exp] 455 / 1e-160 ND 43 / 2e-04 Lus10008200 [exp] 399 / 8e-141 ND 43 / 6e-05 Lus10010074 [exp] 209 / 9e-60 AT1G02520 1591 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10033279 [exp] 162 / 4e-46 AT5G62380 61 / 5e-10 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Lus10033281 [exp] 157 / 2e-44 AT1G71930 57 / 4e-09 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) Lus10022965 [exp] 155 / 1e-43 AT2G24430 62 / 1e-10 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Lus10025078 [exp] 97 / 8e-22 AT1G79580 69 / 1e-12 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Lus10010294 [exp] 94 / 5e-21 AT5G46590 59 / 1e-09 NAC domain containing protein 96 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G027900 [exp] 82 / 3e-17 AT2G24430 66 / 8e-12 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.006G028700 [exp] 80 / 2e-16 AT2G24430 65 / 1e-11 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.015G002900 [exp] 78 / 1e-15 AT1G71930 71 / 2e-13 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) Potri.019G063000 [exp] 76 / 1e-15 AT1G79580 56 / 4e-09 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.006G028300 [exp] 71 / 3e-13 AT3G10480 74 / 5e-14 NAC domain containing protein 50 (.1.2.3) Potri.006G029200 [exp] 67 / 1e-12 AT3G10480 67 / 8e-13 NAC domain containing protein 50 (.1.2.3) Potri.006G231300 [exp] 63 / 1e-10 AT5G62380 61 / 5e-10 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Potri.006G028900 [exp] 60 / 6e-10 AT3G10480 71 / 8e-14 NAC domain containing protein 50 (.1.2.3) Potri.017G058100 [exp] 59 / 1e-09 AT5G62380 49 / 4e-06 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Potri.014G163600 [exp] 59 / 2e-09 AT5G62380 58 / 3e-09 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10008240 pacid=23164934 polypeptide=Lus10008240 locus=Lus10008240.g ID=Lus10008240.BGIv1.0 annot-version=v1.0 ATGGGGGAACAACAAGTACCAAACCACCAATCATCCCAGACCGTAGATCTACTACCTGTTGGTTGCTGCTTCATGCCAACAGAGAAGCAACTGGTAAGCC ACTATCTCTTCAATCATATTTCCGGATTACCTTTGCAAAACCACCCGTTTTGCCCTGTTCCAGTTTTCTTCTGTGATCTGTATGGCTCTGAGGAACCATG GGAGCTTTGGGACCGATTCCAATCCCAAAATAGTTCTGGCCTTTCCACTGGCGATGAAGTCTATTTGATCACAAAACTGAAGCATAAGAAGGTGGCTGGA AAACAATTGAAGCAGAAGAAGATGGCTGGAAAAAGTAATAAACAAAACTATGATCGATTTCTGGGAACCAGTGGGGGTAACTGGCATCGTTCTGATGGCG ATCATGAAATTAAGCTTGATAGGGATTTTGTCGGGGTTCGTAAGAAATTCTCTTACAAAAATCTCAAATCCGAGCAACATGGGTTATGGCTCTTGTCTGA GTATTCGATCAGTTATGATGGTGGGAAGACTTGTTCCGAAGATGTTATATGTGCCCTCAAGGACCATAGAAAATCTGATGAATCAGCCACTGCCAAAAAG AGAAAGTTCGAACAAGTGAATACTACTACTACTGCTGGGCTTCCTTCTTCTTCTAAGGTTCCTAAGCTTGATGATGGTGCCACAAGCTCTGCAACCCTCA TGCAGATGCAGACAAAAGAGAAGCTGCCTATCTCTTTTGATTTCTCAATACCATCTCCCCCAAACGTTCTAGATGCTTCTTCTGTGGGCGACATAATTCA CAACAACGAGCCACTGCCCACAATTCCATCTCACCACTCGGTGGATGACACATCAGGATCTGAGAGTGGACACCTTGATAACAATGATATCTACATTGAT TACGATTCAATTTGGGCACTCCTTGAGGACGACAGTGAAGAGCCTGAAGATAGTGCTTTGCTTGAGCAAGTTCAATCATCCATGATCAAACTAGTTCAAC AGGTTCCTCTTGATCTCGATCTTCCTATTTTGGTTTTTTTTACGGCTGCTAGTGCATTCATGTTAAGATTAGCTGCAACTGAAATGCATATCTTGAACGA CTTGGTTTGA
AA sequence Show only first row Show all	>Lus10008240 pacid=23164934 polypeptide=Lus10008240 locus=Lus10008240.g ID=Lus10008240.BGIv1.0 annot-version=v1.0 MGEQQVPNHQSSQTVDLLPVGCCFMPTEKQLVSHYLFNHISGLPLQNHPFCPVPVFFCDLYGSEEPWELWDRFQSQNSSGLSTGDEVYLITKLKHKKVAG KQLKQKKMAGKSNKQNYDRFLGTSGGNWHRSDGDHEIKLDRDFVGVRKKFSYKNLKSEQHGLWLLSEYSISYDGGKTCSEDVICALKDHRKSDESATAKK RKFEQVNTTTTAGLPSSSKVPKLDDGATSSATLMQMQTKEKLPISFDFSIPSPPNVLDASSVGDIIHNNEPLPTIPSHHSVDDTSGSESGHLDNNDIYID YDSIWALLEDDSEEPEDSALLEQVQSSMIKLVQQVPLDLDLPILVFFTAASAFMLRLAATEMHILNDLV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33060	NAC	ANAC014	NAC 014 (.1.2)		Lus10008240 [exp]	0	1
					Lus10008200 [exp]	1.0	0.9695
AT1G58250		SAB	SABRE, Golgi-body localisation...		Lus10024283 [exp]	8.4	0.9537
AT5G27970			ARM repeat superfamily protein...		Lus10004117 [exp]	10.2	0.9472
					Lus10005601 [exp]	10.4	0.9271
					Lus10002928 [exp]	10.8	0.9373
AT3G02260		CRM1, TIR3, LPR...	UMBRELLA 1, TRANSPORT INHIBITO...		Lus10034360 [exp]	11.4	0.9488
AT5G56700			FBD / Leucine Rich Repeat doma...		Lus10017238 [exp]	17.2	0.8273
AT4G39420			unknown protein		Lus10006814 [exp]	18.2	0.9440
AT5G24740			Protein of unknown function (D...		Lus10003835 [exp]	19.4	0.9441
ATMG00650		ATMG00650.1, NA...	NADH dehydrogenase subunit 4L ...		Lus10004838 [exp]	19.9	0.9323

Compare expression of checked genes

Lus10008240 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.