Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44070 496 / 4e-174 ATPCS1, ARA8, CAD1 CADMIUM SENSITIVE 1, ARABIDOPSIS THALIANA PHYTOCHELATIN SYNTHASE 1, phytochelatin synthase 1 (PCS1) (.1) AT1G03980 492 / 5e-173 ATPCS2 phytochelatin synthase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003622 [exp] 543 / 0 AT5G44070 635 / 0.0 CADMIUM SENSITIVE 1, ARABIDOPSIS THALIANA PHYTOCHELATIN SYNTHASE 1, phytochelatin synthase 1 (PCS1) (.1) Lus10024921 [exp] 531 / 0 AT5G44070 627 / 0.0 CADMIUM SENSITIVE 1, ARABIDOPSIS THALIANA PHYTOCHELATIN SYNTHASE 1, phytochelatin synthase 1 (PCS1) (.1) Lus10038621 [exp] 114 / 1e-30 AT5G44070 109 / 8e-30 CADMIUM SENSITIVE 1, ARABIDOPSIS THALIANA PHYTOCHELATIN SYNTHASE 1, phytochelatin synthase 1 (PCS1) (.1) Lus10003623 [exp] 82 / 5e-18 AT5G44070 69 / 1e-13 CADMIUM SENSITIVE 1, ARABIDOPSIS THALIANA PHYTOCHELATIN SYNTHASE 1, phytochelatin synthase 1 (PCS1) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G195800 [exp] 537 / 0 AT5G44070 644 / 0.0 CADMIUM SENSITIVE 1, ARABIDOPSIS THALIANA PHYTOCHELATIN SYNTHASE 1, phytochelatin synthase 1 (PCS1) (.1) Potri.014G195900 [exp] 451 / 3e-156 AT5G44070 543 / 0.0 CADMIUM SENSITIVE 1, ARABIDOPSIS THALIANA PHYTOCHELATIN SYNTHASE 1, phytochelatin synthase 1 (PCS1) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF05023 [flax] [poplar] Phytochelatin Phytochelatin synthase CL0125 [flax] [poplar] PF09328 [flax] [poplar] Phytochelatin_C Domain of unknown function (DUF1984)
Representative CDS sequence Show only first row Show all	>Lus10008241 pacid=23164929 polypeptide=Lus10008241 locus=Lus10008241.g ID=Lus10008241.BGIv1.0 annot-version=v1.0 ATGGCAACGGCCGGGCTGTATCGCCGGGTCCTCCCTTCTCCGCCTGCCATTGATTTCGCTTCTCCCGAAGGAAAGCAAATATTCAATGAAGCATTTCAAG ATGGAACAATGGAAGGTTTCTTCAAGCTGATATCGTTCTACCAAACGCAGTCTGAGCCAGCGTATTGCGGCCTGGCCAGCCTGTCTATGGTATTGAATGC ACTCGCAATTGACCCTGGCAGGAAGTGGAAAGGACCTTGGAGGTGGTTTGACGAATCGATGTTAGATTGTTGCGAGTCATTGGAGAAGGTGAAAGCCGTG GGCATTTCCTTTGGTAAAGTTGTTTGTTTGGCTCGTTGTGCTGGTGCTGAAGTTGAAGCTTTCCGTACCAATCAATGCACCATCGATGATTACCGTACAT ATGTAATTCAATGTTGCACTTCTGATAATCGCCACCTGATTTCTTCGTATCACAGAGGGGTTTTTAAACAGACAGGAACTGGCCATTTTTCACCTATAGG TGGCTACCACGCTGGAAGGGACATGGCCCTGATTTTGGATGTTGCACGTTTTAAGTATCCTCCCCACTGGGTTCCTCTAACTCTTCTTTGGGAAGCCATG GATACAATTCTTCCGAAAAATGGATTTCGTAGAGGGTTCATGGTAGTTTCAAAACCTCAAAAAGAGTCAGGACTGCTAAATAACCTCATGTGTAAGCAGG AAAGTTGGAACAGTACTGCAAAGTATATAATAGAGGAAGTTCCTGTTCTCTTAGCCGCTGAAGATGTGAAAGACATCAAGAGAGTGCTCCATGTGATATT CATGTCCGTCCCATCAGATTTCGGCGATTTCATCAACTTGGTTGCAGATGATCGAGGGCAAGTAGGAGATGATGAAAACTTAAGCCAACAGGAGAGAGCA CGGCTTGCTGTCAAGGTGGAGGAGGTTTTACGAGAAGTACGAAAAACTGGCCTTTTCAAACTCGTTGCCGCACATCTGTATTCAATTTGCAGAAACATGC CATCTAGGGATAAAGTTGATCATATCGTAGGGAGAGATTCCAGAGGATGCTGTCGCGCCGAGGCGTGCTTAAGATACTTGAAACGGTCTGAAAATGAGTT GAGTTCCCTGGATTGTGACCCAAGTAACTTGCGCGAGAAGTATCCTGCTGGGACTGATGTTGTAACGACACTGCTATTGGCTCTGCCTCTAGAGACATGG TCTGGTATTAGAGATGAGAAACTAGTGAAAGAGATATACACTCTCGTCTCGACTGAACATCTACCTATTCTGCTCCACGACGAGGTAATCACCCATTTGC TCGCTTAA
AA sequence Show only first row Show all	>Lus10008241 pacid=23164929 polypeptide=Lus10008241 locus=Lus10008241.g ID=Lus10008241.BGIv1.0 annot-version=v1.0 MATAGLYRRVLPSPPAIDFASPEGKQIFNEAFQDGTMEGFFKLISFYQTQSEPAYCGLASLSMVLNALAIDPGRKWKGPWRWFDESMLDCCESLEKVKAV GISFGKVVCLARCAGAEVEAFRTNQCTIDDYRTYVIQCCTSDNRHLISSYHRGVFKQTGTGHFSPIGGYHAGRDMALILDVARFKYPPHWVPLTLLWEAM DTILPKNGFRRGFMVVSKPQKESGLLNNLMCKQESWNSTAKYIIEEVPVLLAAEDVKDIKRVLHVIFMSVPSDFGDFINLVADDRGQVGDDENLSQQERA RLAVKVEEVLREVRKTGLFKLVAAHLYSICRNMPSRDKVDHIVGRDSRGCCRAEACLRYLKRSENELSSLDCDPSNLREKYPAGTDVVTTLLLALPLETW SGIRDEKLVKEIYTLVSTEHLPILLHDEVITHLLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03980		ATPCS2	phytochelatin synthase 2 (.1)		Lus10008241 [exp]	0	1
AT1G73360	HD	ATHDG11, HDG11,...	ENHANCED DROUGHT TOLERANCE 1, ...		Lus10031321 [exp]	4.7	0.9104
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10022277 [exp]	5.9	0.8976
AT2G26330		QRP1, ER	QUANTITATIVE RESISTANCE TO PLE...		Lus10038071 [exp]	7.2	0.9111
AT2G22840	GRF	ATGRF1	growth-regulating factor 1 (.1...		Lus10019275 [exp]	8.5	0.9008
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Lus10018360 [exp]	14.7	0.8855
AT1G73360	HD	ATHDG11, HDG11,...	ENHANCED DROUGHT TOLERANCE 1, ...		Lus10031892 [exp]	15.0	0.8854
AT3G10140		RECA3	RECA homolog 3 (.1)		Lus10042033 [exp]	16.4	0.8455
AT2G26330		QRP1, ER	QUANTITATIVE RESISTANCE TO PLE...		Lus10009790 [exp]	18.3	0.8944
AT5G40840		SYN2, ATRAD21.1	Sister chromatid cohesion 1 \(...		Lus10041587 [exp]	18.8	0.9001
AT4G21750	HD	ATML1	MERISTEM LAYER 1, Homeobox-leu...		Lus10006765 [exp]	21.2	0.8786

Compare expression of checked genes

Lus10008241 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.