Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28560 394 / 3e-134 RIC7 ROP-interactive CRIB motif-containing protein 7 (.1) AT1G13230 171 / 1e-48 Leucine-rich repeat (LRR) family protein (.1) AT3G25670 166 / 5e-46 Leucine-rich repeat (LRR) family protein (.1) AT1G68780 162 / 7e-45 RNI-like superfamily protein (.1) AT2G42800 144 / 3e-38 AtRLP29 receptor like protein 29 (.1) AT1G80080 121 / 6e-30 AtRLP17, TMM TOO MANY MOUTHS, Receptor Like Protein 17, Leucine-rich repeat (LRR) family protein (.1) AT3G11080 115 / 4e-27 AtRLP35 receptor like protein 35 (.1) AT5G46330 111 / 8e-26 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT3G24240 110 / 1e-25 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT3G20820 107 / 1e-25 Leucine-rich repeat (LRR) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003624 [exp] 688 / 0 AT4G28560 441 / 2e-152 ROP-interactive CRIB motif-containing protein 7 (.1) Lus10031383 [exp] 156 / 6e-42 AT2G42800 446 / 1e-152 receptor like protein 29 (.1) Lus10038948 [exp] 150 / 1e-40 AT1G68780 404 / 2e-138 RNI-like superfamily protein (.1) Lus10010946 [exp] 148 / 1e-39 AT2G42800 459 / 2e-159 receptor like protein 29 (.1) Lus10034261 [exp] 134 / 1e-34 AT1G13230 460 / 6e-161 Leucine-rich repeat (LRR) family protein (.1) Lus10027239 [exp] 132 / 6e-34 AT3G25670 402 / 6e-138 Leucine-rich repeat (LRR) family protein (.1) Lus10026208 [exp] 131 / 1e-33 AT1G80080 500 / 2e-175 TOO MANY MOUTHS, Receptor Like Protein 17, Leucine-rich repeat (LRR) family protein (.1) Lus10034384 [exp] 129 / 4e-33 AT1G13230 455 / 5e-159 Leucine-rich repeat (LRR) family protein (.1) Lus10042458 [exp] 122 / 7e-31 AT1G80080 467 / 3e-163 TOO MANY MOUTHS, Receptor Like Protein 17, Leucine-rich repeat (LRR) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G227600 [exp] 433 / 3e-149 AT4G28560 444 / 2e-153 ROP-interactive CRIB motif-containing protein 7 (.1) Potri.008G114700 [exp] 152 / 6e-41 AT1G68780 387 / 2e-131 RNI-like superfamily protein (.1) Potri.008G211800 [exp] 147 / 2e-39 AT2G42800 474 / 7e-166 receptor like protein 29 (.1) Potri.001G202100 [exp] 130 / 3e-33 AT1G80080 597 / 0.0 TOO MANY MOUTHS, Receptor Like Protein 17, Leucine-rich repeat (LRR) family protein (.1) Potri.016G126900 [exp] 119 / 2e-28 AT1G45616 510 / 5e-165 receptor like protein 6 (.1) Potri.008G093400 [exp] 114 / 3e-28 AT5G61240 513 / 0.0 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Potri.010G160700 [exp] 113 / 4e-28 AT5G61240 517 / 0.0 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Potri.010G040200 [exp] 116 / 1e-27 AT5G23400 275 / 3e-83 Leucine-rich repeat (LRR) family protein (.1) Potri.011G104600 [exp] 114 / 7e-27 AT2G15080 421 / 5e-129 receptor like protein 19 (.1.2) Potri.002G008450 [exp] 113 / 8e-27 AT4G08850 462 / 9e-150 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10008242 pacid=23164899 polypeptide=Lus10008242 locus=Lus10008242.g ID=Lus10008242.BGIv1.0 annot-version=v1.0 ATGGCAACCTCCGTTTCGCTTCTCACCCTCCTCTTTCTCGCCCTGCTACTCTGCTCCTCCGCCGCCGACGACGTCCCCCTCCTTGACCCCGCCGAGCAGG AATCCGTCTACCGTGTCCTTAACGCCGTCAACCCCAACATCCCCTGGCGCTCTTTCTTCCCAGACGACCTCTGCCTCTCCTCCCCACACGGCGTCGTGTG CGACTACTTCGACTCCAACGACGGCTTTTACACCTCGGCTCATATCACGGAGCTAAGTTTCGGGTATGTTTCGGACTACACTCCCAACCCGCCTTGCTCT GCTAACGCCACCATCGACCCGCTCCTCTTCACCTCCTTCACCTTCCTCCGCAAGCTTTTCTTCTACCACTGTTTCTCTGCTTCTTCCGGTGGAGGTAGTC CGATAGTCGCTTTCCCGGACGTCTCTTCTTCCTTCCCGTCTTTCGGAGCTAGCCTCGTGGAGCTAGTCCTTATCGACAACCCTGGACTCGTCGCCCCTTT TTCCTCCGTCGTTTCCGCCAATTTCACTAATCTCCGGCGGCTGGTGGTCACCGGAAACGGAGTGTACGGCGACCTTCCGGAGGAGAAGATCGGATCTCTG GTGAACCTCGAAGAAATCACTCTGTCCGGGAACCAATTGTCCGGCGGAATTCCTTCCACCGTAGGTAATTTGAAGAAGCTCAGGTCTGCGGATTTCAGCC GCAACTGCTTCGCCGGAATAGTCCCTGATTCAATCGGAAATCTACCGCGGCTTCTAAAGCTTGACCTGTCATCCAATTTGTTTTCCGGCAGAATCCCGGA GAATTTCGTCAACCTCAAGAGCTTGAAGTTTCTGGACCTGAGTTTCAACCGATTCGGCAACTACGGCATCCCGCTCTTCATCGGGGAGCTCCCGAAGCTG AGAGAAGTCTACATGAGCGGCAATCCGCTGGGAGGGAGCATCCCGGTTGAGATATGGAGCAATTTGGGGGGAGTTTCAGGGATCGGATTCTCGAACATGA GTCTCGCCGGTGAAATTCCGGCTACCATGGGTATGCATCTGAAGAGCTTGTGCTACCTAGGGCTAGACAACAACAACCTGGTAGGGAAAGTCCCGGAAGA GCTGAGTGGGCTGGAGTTTGTTAGCGAGATAAACTTGGAGAACAATAGCAGTTTTGATCACTTGAGGCATATGAAGCTGTGCAGCAACGATTCAAACAAC AACCCGAATCCAGCCATTTGGGGAGAAGAAAGCTCCTCCTCTTCCTTTAATTCTGCAGCAGCTGCTGTATCCCCTGTTTCACTTCATTTTCAGGTGATGA TGATGATCTTCTGTGGTTATCTTCTGGCCTAA
AA sequence Show only first row Show all	>Lus10008242 pacid=23164899 polypeptide=Lus10008242 locus=Lus10008242.g ID=Lus10008242.BGIv1.0 annot-version=v1.0 MATSVSLLTLLFLALLLCSSAADDVPLLDPAEQESVYRVLNAVNPNIPWRSFFPDDLCLSSPHGVVCDYFDSNDGFYTSAHITELSFGYVSDYTPNPPCS ANATIDPLLFTSFTFLRKLFFYHCFSASSGGGSPIVAFPDVSSSFPSFGASLVELVLIDNPGLVAPFSSVVSANFTNLRRLVVTGNGVYGDLPEEKIGSL VNLEEITLSGNQLSGGIPSTVGNLKKLRSADFSRNCFAGIVPDSIGNLPRLLKLDLSSNLFSGRIPENFVNLKSLKFLDLSFNRFGNYGIPLFIGELPKL REVYMSGNPLGGSIPVEIWSNLGGVSGIGFSNMSLAGEIPATMGMHLKSLCYLGLDNNNLVGKVPEELSGLEFVSEINLENNSSFDHLRHMKLCSNDSNN NPNPAIWGEESSSSSFNSAAAAVSPVSLHFQVMMMIFCGYLLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28560		RIC7	ROP-interactive CRIB motif-con...		Lus10008242 [exp]	0	1
AT3G51980			ARM repeat superfamily protein...		Lus10023269 [exp]	3.5	0.9231
AT1G49180			protein kinase family protein ...		Lus10033518 [exp]	8.8	0.9089
AT2G43370			RNA-binding (RRM/RBD/RNP motif...		Lus10025557 [exp]	9.9	0.9148
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022190 [exp]	10.2	0.9331
AT1G56310			Polynucleotidyl transferase, r...		Lus10010930 [exp]	13.2	0.8678
AT2G45240		MAP1A	methionine aminopeptidase 1A (...		Lus10021657 [exp]	14.5	0.9017
AT5G57700			BNR/Asp-box repeat family prot...		Lus10008903 [exp]	15.5	0.9192
AT3G27020		YSL6	YELLOW STRIPE like 6 (.1)		Lus10041544 [exp]	18.7	0.9103
AT1G11530		ATCXXS1	C-terminal cysteine residue is...		Lus10007630 [exp]	19.9	0.9242
AT3G29090		PME31, ATPME31	A. THALIANA PECTIN METHYLESTER...		Lus10041699 [exp]	21.4	0.9226

Compare expression of checked genes

Lus10008242 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.