Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28556 90 / 2e-22 RIC7 PAK-box/P21-Rho-binding family protein (.1) AT2G33460 89 / 3e-22 RIC1 ROP-interactive CRIB motif-containing protein 1 (.1) AT3G23380 88 / 4e-22 RIC5 ROP-interactive CRIB motif-containing protein 5 (.1) AT2G20430 83 / 4e-20 RIC6 ROP-interactive CRIB motif-containing protein 6 (.1) AT1G04450 81 / 4e-19 RIC3 ROP-interactive CRIB motif-containing protein 3 (.1) AT4G04900 69 / 2e-15 RIC10 ROP-interactive CRIB motif-containing protein 10 (.1) AT1G03982 61 / 8e-12 PAK-box/P21-Rho-binding family protein (.1) AT1G61795 50 / 2e-08 PAK-box/P21-Rho-binding family protein (.1) AT4G21745 49 / 9e-08 PAK-box/P21-Rho-binding family protein (.1) AT5G16490 39 / 0.0004 RIC4 ROP-interactive CRIB motif-containing protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003625 [exp] 238 / 3e-81 AT4G28556 94 / 3e-24 PAK-box/P21-Rho-binding family protein (.1) Lus10018362 [exp] 71 / 2e-15 AT4G04900 94 / 2e-24 ROP-interactive CRIB motif-containing protein 10 (.1) Lus10006763 [exp] 68 / 2e-14 AT4G04900 81 / 2e-19 ROP-interactive CRIB motif-containing protein 10 (.1) Lus10007648 [exp] 67 / 3e-14 AT4G04900 88 / 2e-22 ROP-interactive CRIB motif-containing protein 10 (.1) Lus10011805 [exp] 65 / 5e-13 AT2G33460 97 / 2e-24 ROP-interactive CRIB motif-containing protein 1 (.1) Lus10021168 [exp] 51 / 1e-07 AT2G33460 81 / 3e-17 ROP-interactive CRIB motif-containing protein 1 (.1) Lus10020060 [exp] 49 / 3e-07 AT3G54200 72 / 4e-15 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G227500 [exp] 102 / 3e-27 AT4G28556 106 / 5e-28 PAK-box/P21-Rho-binding family protein (.1) Potri.002G035500 [exp] 96 / 1e-24 AT2G20430 105 / 1e-27 ROP-interactive CRIB motif-containing protein 6 (.1) Potri.010G069500 [exp] 88 / 3e-21 AT4G28556 99 / 1e-24 PAK-box/P21-Rho-binding family protein (.1) Potri.008G168900 [exp] 80 / 2e-18 AT2G33460 101 / 4e-26 ROP-interactive CRIB motif-containing protein 1 (.1) Potri.004G020650 [exp] 74 / 4e-17 AT4G04900 73 / 1e-16 ROP-interactive CRIB motif-containing protein 10 (.1) Potri.011G025300 [exp] 73 / 1e-16 AT4G04900 89 / 5e-23 ROP-interactive CRIB motif-containing protein 10 (.1) Potri.002G233400 [exp] 53 / 8e-09 AT5G16490 89 / 1e-22 ROP-interactive CRIB motif-containing protein 4 (.1) Potri.013G086600 [exp] 41 / 9e-05 AT5G16490 109 / 7e-31 ROP-interactive CRIB motif-containing protein 4 (.1) Potri.019G053300 [exp] 40 / 0.0002 AT5G16490 108 / 2e-30 ROP-interactive CRIB motif-containing protein 4 (.1) Potri.014G147000 [exp] 39 / 0.0005 AT5G16490 76 / 8e-18 ROP-interactive CRIB motif-containing protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00786 [flax] [poplar] PBD P21-Rho-binding domain
Representative CDS sequence Show only first row Show all	>Lus10008243 pacid=23164914 polypeptide=Lus10008243 locus=Lus10008243.g ID=Lus10008243.BGIv1.0 annot-version=v1.0 ATGAAAGGTCTCTTGAAGGGCCTGCGATACATTTCTCAGATATTCGATGATGAAGAAAAGGAGCCAGAAATGCAGATTGGTAACCCTACAGATGTAAAAC ATGTTGCTCACATTGGTTGGGATGCCAACAATGACGGTCCTCCCACTTGGATGAACGGATTCCAGGAGCAACCAGGATCACCGGGAGGAGGAAAGAAGTC GTCGGAGCATCCAAAATCATCCAGACGGAAGTCAGCAGCCGGTAATGAATCGGACAACAAGCACAATAAGAAAACTTCCCGACACACCAAAAAGGAGAAT CAGTCGTCGGAGAAAGCAAAATCGACAGGGAGGAGTAGTTGCAAGGACGAAGTTGAAGTGGGGAGTAGCCAGGTGGATGCACCAAAGAAAGTGAGGAGGA AGAAATCAAAAGAATCGGAGGTCGAAGGTTCGAAATCCAGGCCGAAAGCTGCAGCTGTAATTAGTACTCCAATGGAAGAAGGACGAGGCCATGGCGGGTT TACTTAA
AA sequence Show only first row Show all	>Lus10008243 pacid=23164914 polypeptide=Lus10008243 locus=Lus10008243.g ID=Lus10008243.BGIv1.0 annot-version=v1.0 MKGLLKGLRYISQIFDDEEKEPEMQIGNPTDVKHVAHIGWDANNDGPPTWMNGFQEQPGSPGGGKKSSEHPKSSRRKSAAGNESDNKHNKKTSRHTKKEN QSSEKAKSTGRSSCKDEVEVGSSQVDAPKKVRRKKSKESEVEGSKSRPKAAAVISTPMEEGRGHGGFT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28556		RIC7	PAK-box/P21-Rho-binding family...		Lus10008243 [exp]	0	1
AT2G24130			Leucine-rich receptor-like pro...		Lus10022180 [exp]	1.4	0.8701
AT1G15330		AtPV42a	Cystathionine beta-synthase (C...		Lus10004227 [exp]	3.3	0.8704
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10020250 [exp]	8.2	0.7953
AT2G18370			Bifunctional inhibitor/lipid-t...		Lus10038429 [exp]	27.9	0.8509
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Lus10010023 [exp]	49.7	0.7621
AT4G08180		ORP1C	OSBP(oxysterol binding protein...		Lus10025695 [exp]	57.9	0.7741
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10004519 [exp]	77.5	0.8178
AT5G22210			unknown protein		Lus10043407 [exp]	81.6	0.7702
AT1G80320			2-oxoglutarate (2OG) and Fe(II...		Lus10041279 [exp]	92.3	0.7992
AT3G11080		AtRLP35	receptor like protein 35 (.1)		Lus10028053 [exp]	100.3	0.7628

Compare expression of checked genes

Lus10008243 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.