Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023042 [exp] 186 / 5e-57 AT1G69630 61 / 4e-10 F-box/RNI-like superfamily protein (.1) Lus10032432 [exp] 186 / 5e-56 AT1G69630 76 / 1e-14 F-box/RNI-like superfamily protein (.1) Lus10014142 [exp] 179 / 8e-53 AT3G18150 66 / 2e-11 RNI-like superfamily protein (.1) Lus10029587 [exp] 172 / 2e-51 AT5G02930 74 / 3e-14 F-box/RNI-like superfamily protein (.1) Lus10006318 [exp] 174 / 2e-49 AT1G69630 74 / 9e-14 F-box/RNI-like superfamily protein (.1) Lus10029588 [exp] 158 / 8e-48 AT1G69630 54 / 2e-08 F-box/RNI-like superfamily protein (.1) Lus10029589 [exp] 166 / 2e-47 AT5G02930 71 / 5e-13 F-box/RNI-like superfamily protein (.1) Lus10029586 [exp] 155 / 2e-44 AT3G18150 78 / 2e-15 RNI-like superfamily protein (.1) Lus10006319 [exp] 148 / 5e-43 AT1G69630 67 / 2e-12 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002100 [exp] 59 / 1e-09 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.001G337200 [exp] 41 / 0.0005 AT5G22660 86 / 6e-19 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008245 pacid=23164923 polypeptide=Lus10008245 locus=Lus10008245.g ID=Lus10008245.BGIv1.0 annot-version=v1.0 ATGACAGCTGCCGGAGGAGGAGAAATTGACAGAATAAGTAATCTCCGACTCCATTCTTCACCACATCCTCTCCTTTCTCGACACTCAGTCCGCCGTCAAA ACTTGTGTATTGCCAAGCAGTGGGAATCCACCTGGAAACATGTTCATTCTCTGAATCTGAAGCTGAATTTCCATGAATACTCGAGGTACAAAACGTTTGT CGACAAAGTCTTGTCTCTTCGCCATCCGCTTCATGTTAGCAAGGTGGTCACGAATGGGCGGCATCATGACGCTCCTTATGATTGTTCTGAGTTTAGTCTG CTCAGAGAGGTCGTCCAATATGCAGTGTCCCATGGTGCTCAACATTTCTACCTAGGACACCATAAAACCGATATCCTTCTTCTCCAATTATTTGATCCCA TCTCCGACACTGTTAAAACCCTAGAATCAAAATGGTCTTACCTCGATTGTCCACCCTTATGGTCTGGATTCCAGTTGCTAACAACATTAGAGCTGCTACA TTGTCGGTTCGTAACTGATCTAGACCCTGCTGAGCCTTTTTCTCAATTCCCCTGTTTGAAGAATTTGGTATTGGATGGCGGCGCGTGTGTATCTGAAGTT GATGATCATGTTGATTATGGCCAAACATTAAGGGTTTCAGGAATCCAGCTGGCAGTCCGTAGGGAGTCTGAGTTTCTAGAGCAACAGCGTTGTCCATTTA CCAATTTGAACAAGTTAAATATGGAGTTTGAGTCCTGCTACGACATACCTTATAAGGTTCTGAATTGCTACTTCCTCAATGGATGTTCTAATGCTAGCCT AAATATCCAGAGTGTGGACGAAGAATCCTGGTCAGTAATGATTGAGCGTGTGCCCTGA
AA sequence Show only first row Show all	>Lus10008245 pacid=23164923 polypeptide=Lus10008245 locus=Lus10008245.g ID=Lus10008245.BGIv1.0 annot-version=v1.0 MTAAGGGEIDRISNLRLHSSPHPLLSRHSVRRQNLCIAKQWESTWKHVHSLNLKLNFHEYSRYKTFVDKVLSLRHPLHVSKVVTNGRHHDAPYDCSEFSL LREVVQYAVSHGAQHFYLGHHKTDILLLQLFDPISDTVKTLESKWSYLDCPPLWSGFQLLTTLELLHCRFVTDLDPAEPFSQFPCLKNLVLDGGACVSEV DDHVDYGQTLRVSGIQLAVRRESEFLEQQRCPFTNLNKLNMEFESCYDIPYKVLNCYFLNGCSNASLNIQSVDEESWSVMIERVP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69630			F-box/RNI-like superfamily pro...		Lus10008245 [exp]	0	1
AT3G24440		VRN5, VIL1	VERNALIZATION 5, VIN3-LIKE 1, ...		Lus10043250 [exp]	13.2	0.7978
AT5G16030			unknown protein		Lus10017573 [exp]	21.6	0.7738
AT1G12550		HPR3	hydroxypyruvate reductase 3, D...		Lus10041391 [exp]	27.0	0.6934
AT5G48040			Ubiquitin carboxyl-terminal hy...		Lus10011327 [exp]	34.2	0.7897
AT2G02120		PDF2.1, LCR70	LOW-MOLECULAR-WEIGHT CYSTEINE-...		Lus10019226 [exp]	34.3	0.7308
AT5G16860			Tetratricopeptide repeat (TPR)...		Lus10029888 [exp]	37.4	0.7659
AT1G11870		AtSRS, OVA7	ovule abortion 7, Seryl-tRNA s...		Lus10010344 [exp]	46.1	0.7539
AT3G24440		VRN5, VIL1	VERNALIZATION 5, VIN3-LIKE 1, ...		Lus10043251 [exp]	47.2	0.7666
AT1G31500			DNAse I-like superfamily prote...		Lus10000006 [exp]	50.0	0.7219
					Lus10011725 [exp]	55.6	0.7546

Compare expression of checked genes

Lus10008245 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.