Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20450 228 / 1e-78 Ribosomal protein L14 (.1) AT4G27090 227 / 3e-78 Ribosomal protein L14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024918 [exp] 254 / 9e-89 AT2G20450 224 / 3e-77 Ribosomal protein L14 (.1) Lus10011807 [exp] 253 / 2e-88 AT2G20450 221 / 9e-76 Ribosomal protein L14 (.1) Lus10021170 [exp] 250 / 2e-87 AT2G20450 218 / 1e-74 Ribosomal protein L14 (.1) Lus10003627 [exp] 157 / 3e-51 AT4G27090 139 / 2e-44 Ribosomal protein L14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G168600 [exp] 239 / 3e-83 AT4G27090 230 / 2e-79 Ribosomal protein L14 (.1) Potri.005G227300 [exp] 238 / 2e-82 AT4G27090 235 / 3e-81 Ribosomal protein L14 (.1) Potri.002G035700 [exp] 236 / 6e-82 AT4G27090 234 / 8e-81 Ribosomal protein L14 (.1) Potri.010G069900 [exp] 235 / 2e-81 AT4G27090 228 / 2e-78 Ribosomal protein L14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0107 [flax] [poplar] KOW PF01929 [flax] [poplar] Ribosomal_L14e Ribosomal protein L14
Representative CDS sequence Show only first row Show all	>Lus10008246 pacid=23164906 polypeptide=Lus10008246 locus=Lus10008246.g ID=Lus10008246.BGIv1.0 annot-version=v1.0 ATGGGTTTCAAGAGGTACGTGGAGATCGGTAGAGTGGCGCTCATCAACTACGGCAAGGACTACGGAAAGCTCGTGGTCATCGTCGATGTCGTTGATCAGA ACAGGGCTCTGGTTGATGCACCAGACATGGTGAGGAGCCAGCTGAACTTCAAGAGGCTAACACTCACCGATATCAAGATTGAGATCAACAGGGTTCCCAA GAAGAAGACACTGATTGAAGCAATGGAGAAAGCAGACGTTAAGGGGAAGTGGGAGAGCAGTTCGTGGGGAAGGAAGCTGATTGTCCAGAAGAGGAGAGCC GCTCTCACCGATTTTGACAGGTTCAAGGTCATGCTGGCTAAGATAAAGAGAGGAGGGCTGGTCAGGCAGGAGCTTGCGAAACTGAAAAAGACGTCTGCCT AG
AA sequence Show only first row Show all	>Lus10008246 pacid=23164906 polypeptide=Lus10008246 locus=Lus10008246.g ID=Lus10008246.BGIv1.0 annot-version=v1.0 MGFKRYVEIGRVALINYGKDYGKLVVIVDVVDQNRALVDAPDMVRSQLNFKRLTLTDIKIEINRVPKKKTLIEAMEKADVKGKWESSSWGRKLIVQKRRA ALTDFDRFKVMLAKIKRGGLVRQELAKLKKTSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20450			Ribosomal protein L14 (.1)		Lus10008246 [exp]	0	1
AT5G50810		TIM8	translocase inner membrane sub...		Lus10022450 [exp]	1.0	0.9601
AT5G56670			Ribosomal protein S30 family p...		Lus10017473 [exp]	2.4	0.9302
AT3G18760			Translation elongation factor...		Lus10006729 [exp]	2.8	0.9193
AT1G34030			Ribosomal protein S13/S18 fami...		Lus10014676 [exp]	5.8	0.9383
AT5G40080			Mitochondrial ribosomal protei...		Lus10003002 [exp]	6.0	0.9148
AT3G10090			Nucleic acid-binding, OB-fold-...		Lus10016222 [exp]	6.9	0.9202
AT3G11500			Small nuclear ribonucleoprotei...		Lus10017019 [exp]	7.5	0.9131
AT2G34520		RPS14	mitochondrial ribosomal protei...		Lus10034657 [exp]	9.0	0.8953
AT5G56710			Ribosomal protein L31e family ...		Lus10037703 [exp]	10.2	0.9236
AT4G13720			Inosine triphosphate pyrophosp...		Lus10011757 [exp]	11.1	0.8817

Compare expression of checked genes

Lus10008246 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.