Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44090 719 / 0 Calcium-binding EF-hand family protein (.1) AT1G03960 700 / 0 Calcium-binding EF hand family protein (.1.2) AT5G28850 691 / 0 Calcium-binding EF-hand family protein (.1.2) AT5G28900 691 / 0 Calcium-binding EF-hand family protein (.1) AT1G54450 681 / 0 Calcium-binding EF-hand family protein (.1) AT5G18580 87 / 3e-18 FASS2, TON2, GDO, FS1, EMB40, FASS GORDO, FASS 1, EMBRYO DEFECTIVE 40, tonneau 2 (TON2) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003628 [exp] 979 / 0 AT5G44090 775 / 0.0 Calcium-binding EF-hand family protein (.1) Lus10024917 [exp] 834 / 0 AT5G44090 751 / 0.0 Calcium-binding EF-hand family protein (.1) Lus10022907 [exp] 833 / 0 AT5G44090 737 / 0.0 Calcium-binding EF-hand family protein (.1) Lus10021174 [exp] 712 / 0 AT5G28850 804 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10029614 [exp] 705 / 0 AT5G28850 792 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10011811 [exp] 701 / 0 AT5G28850 797 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10032772 [exp] 696 / 0 AT5G28850 778 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10027963 [exp] 668 / 0 AT5G28850 771 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10008193 [exp] 655 / 0 AT5G28850 768 / 0.0 Calcium-binding EF-hand family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G035800 [exp] 764 / 0 AT5G44090 814 / 0.0 Calcium-binding EF-hand family protein (.1) Potri.005G227100 [exp] 751 / 0 AT5G44090 772 / 0.0 Calcium-binding EF-hand family protein (.1) Potri.019G019500 [exp] 725 / 0 AT5G28850 885 / 0.0 Calcium-binding EF-hand family protein (.1.2) Potri.013G047300 [exp] 720 / 0 AT5G28850 887 / 0.0 Calcium-binding EF-hand family protein (.1.2) Potri.010G022300 [exp] 81 / 4e-16 AT5G18580 835 / 0.0 GORDO, FASS 1, EMBRYO DEFECTIVE 40, tonneau 2 (TON2) (.1) Potri.008G215300 [exp] 79 / 3e-15 AT5G18580 830 / 0.0 GORDO, FASS 1, EMBRYO DEFECTIVE 40, tonneau 2 (TON2) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0330 [flax] [poplar] AVL9 PF08616 [flax] [poplar] SPA Stabilization of polarity axis
Representative CDS sequence Show only first row Show all	>Lus10008247 pacid=23164904 polypeptide=Lus10008247 locus=Lus10008247.g ID=Lus10008247.BGIv1.0 annot-version=v1.0 ATGGATATTGACACTGTAGGAGGAAATGATTTTAGTAGCTATTTGGATCCTGAACTGTTGCATCTTCCCGAGGTTTCTCCATTTGAGCTCAACCCGACTA CTCAAGTCGCTGAAGATTTATTTTTTCAATGGCTCTCTCTGCCTGACACAAGCCGGCTGGTCAAATCATTAGTTAGGGACGCGAAGGCCGGGCTTCCAAT AAATGCTCATGGGATCTCTTCTAGTGTTGGTGCTGGAGGAAGCAATTCGGTTACAAGTGCCAGTCCGCCTCCACTTTCGCCCAGGAGTTCGTGTGTTTCT CCACGGACATCAAAGTATAAAGCAAGCCCTTTCTCTTTGGCATCTCCTCGGAAGTTGGCTACTGAAACGGTGCAAGAAGTTATACCTCAGTTCTATTTCC AACATGGGCGTCCTCCGCCAAGTGAACTGATGGAACAGTGTCTTTCTACAGTCGATAGACTATTCAACAATAATCTTGATGGACTGCACATAGATGAATT CAAGTCTGTGACGAAGGAAGTTTGCAACCTTCCATCCTTCTTCTCATCCGTGCTTTTCAAGAGGATAGATGTTGAAAGCTATGGGATTGTCACGAGGGAT GCATTTGTAAAATACTGGGTGAAGAGCAATATGCTCACTATGGATATGGCAACTCAAGTCTTTAAGATTTTAAAGCAGCCTGAAAGGCGGTATATAACTA AGGCTGACTTCAAACCTATTCTTGAAGAACTGCTATCCACCCACTCTGGGCTGGAATTTTTACAGGGTACACCTGAGTTTCAAGAGAAATATGCTGAAAC AGTCATCTGTAGAATATTTTACCACGTCAATAGATCAGGAAATGGCCGTCTGACCCTAAGGGAATTGAAACTTAGCAATCTCATCGCTGTCATGCAACAA GTTGACGAAGAAGAGGAAATCAACAAAATCCTAAGATACTTCTCCTATGAACATTTCTATGTGATATATTGCAAATTTTGGGAGCTGGACACAGACCATG ATTACTTGATCGACCGGGAGAATCTCATCAGATATGGTAATCATTGTCTTACATACAGGATTGTTGATAGAATATTTTCACAGGCACCAAGGAAGTTTAC GAGCAATGTGGAAGGAAAGATGAGCTATGAAGATTTTGTTTATTTCATACTGTCGGAGGAGGATAAATCTTCTGAACCTAGTCTTGAATATTGGTTCAGA TGCGTTGATTTGGATGGAAATGGGGTCCTAACATCCAGTGAATTGCAATACTTCTACGAGGAGCAGCTGCACCGAATGAGTTGCATGTCGCAGGAAACTG TTCCTTTTGAGGATATATTGTGCCAAATAGTTGACATGATTTCACCTGAGAAGGAAGGCTATATAACATTGCGTGACTTGAAAAGAAGCAAACTTTCCGG GAATATTTTCAACATTCTATTCAATCTCAATAAATTCATGGCCTTTGAAAGTCGTGACCCGTTTCTAATCCATCAGGAGCGCGAGGAACCAACTTTAACC GAGTGGGATCGGTTCGCACATAGAGAATATATCAGACTTTCAATGGAGGAAGACACAGAGGTCGTTTCAAACGGAAATGTAGAAACGTGGGAAGAATCTT TCGAGGCTCCATTCTAA
AA sequence Show only first row Show all	>Lus10008247 pacid=23164904 polypeptide=Lus10008247 locus=Lus10008247.g ID=Lus10008247.BGIv1.0 annot-version=v1.0 MDIDTVGGNDFSSYLDPELLHLPEVSPFELNPTTQVAEDLFFQWLSLPDTSRLVKSLVRDAKAGLPINAHGISSSVGAGGSNSVTSASPPPLSPRSSCVS PRTSKYKASPFSLASPRKLATETVQEVIPQFYFQHGRPPPSELMEQCLSTVDRLFNNNLDGLHIDEFKSVTKEVCNLPSFFSSVLFKRIDVESYGIVTRD AFVKYWVKSNMLTMDMATQVFKILKQPERRYITKADFKPILEELLSTHSGLEFLQGTPEFQEKYAETVICRIFYHVNRSGNGRLTLRELKLSNLIAVMQQ VDEEEEINKILRYFSYEHFYVIYCKFWELDTDHDYLIDRENLIRYGNHCLTYRIVDRIFSQAPRKFTSNVEGKMSYEDFVYFILSEEDKSSEPSLEYWFR CVDLDGNGVLTSSELQYFYEEQLHRMSCMSQETVPFEDILCQIVDMISPEKEGYITLRDLKRSKLSGNIFNILFNLNKFMAFESRDPFLIHQEREEPTLT EWDRFAHREYIRLSMEEDTEVVSNGNVETWEESFEAPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44090			Calcium-binding EF-hand family...		Lus10008247 [exp]	0	1
AT5G44090			Calcium-binding EF-hand family...		Lus10003628 [exp]	1.0	0.9468
AT1G09060			Zinc finger, RING-type;Transcr...		Lus10017092 [exp]	2.4	0.9408
AT4G03115			Mitochondrial substrate carrie...		Lus10024769 [exp]	3.9	0.9286
AT2G44950		RDO4, HUB1	REDUCED DORMANCY 4, histone mo...		Lus10042890 [exp]	4.2	0.9239
AT1G80150			Tetratricopeptide repeat (TPR)...		Lus10019119 [exp]	4.6	0.9189
AT3G07740		HXA2, HXA02, HA...	homolog of yeast ADA2 2A (.1.2...		Lus10017553 [exp]	4.9	0.9331
AT1G23890			NHL domain-containing protein ...		Lus10030639 [exp]	5.6	0.9019
AT2G39630			Nucleotide-diphospho-sugar tra...		Lus10005164 [exp]	6.3	0.9169
AT2G34730			myosin heavy chain-related (.1...		Lus10023264 [exp]	8.5	0.8993
AT3G49640			Aldolase-type TIM barrel famil...		Lus10003486 [exp]	8.7	0.9335

Compare expression of checked genes

Lus10008247 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.