Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G35340 160 / 2e-47 ATP-dependent protease La (LON) domain protein (.1), ATP-dependent protease La (LON) domain protein (.2), ATP-dependent protease La (LON) domain protein (.3), ATP-dependent protease La (LON) domain protein (.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016932 [exp] 322 / 1e-104 AT1G22540 673 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G105500 [exp] 198 / 3e-61 AT1G35340 285 / 1e-94 ATP-dependent protease La (LON) domain protein (.1), ATP-dependent protease La (LON) domain protein (.2), ATP-dependent protease La (LON) domain protein (.3), ATP-dependent protease La (LON) domain protein (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0178 [flax] [poplar] PUA PF02190 [flax] [poplar] LON_substr_bdg ATP-dependent protease La (LON) substrate-binding domain
Representative CDS sequence Show only first row Show all	>Lus10008251 pacid=23154286 polypeptide=Lus10008251 locus=Lus10008251.g ID=Lus10008251.BGIv1.0 annot-version=v1.0 ATGAGCTATGGAGCGAGCCACGTCAATCCCTCTAGCCTCACCCGCATCACTGAGCCGCGAATCCGTAGCTGGAGAAGCGACTCAACAACAACACCGCACT CTCTTCCCGCCACTCTTCCTTTCCACCCTTCAATTTCCAGCTCAAACACCACCTCTTCCGTCGTACAATCCAGAAATGGCGCTGTCAATCATCTCCTTCC TTTTAACTCGAATGAGGTGCTAGTTCCTCCTGAGAGCAAGACTCTGCATCTTTACGAAGCTAGGTATTTGGCTTTACTTGAAGAGGCTTTGGCACAGAAG AAGATGTTTGTGCATTTTGTTTTGGATCCTGTCTCCGTTAGCAATTCAGGAAGTGAAGCATCTTTGCTGCTAGATACGGTTGCCTGGTCAATTTGGAAAG TTGAGCGCTTAGATGTTGGAGCATTGGTGTCTGTTCGAGGAATTGGCCGCGTCAAGCTTGTTGGGTTCCTACAGTCAGAGCCTTACTTGAGAGGTGAAGT GATGTCGATGCAGGACATGGTTGACAGCAGCCAGAATGCGATCAACTCAAAAGTTACAGAACTGAAGGACGCTCATGGCAAGTTAAATCGCCTAGAAATC AGACTTAAGGAACCCGCATTAGAATGTGATGGAGCTTTCATCCCGTCTCTCGCCGAAAGAGTATCCTTTGCAGCTCTGCAACCAGTTTCAGGCAAACTAA ATTTCATTACATCACATCTACATTCGTTCCAGTACAAGGGTTCGTCGCAGTCAGAGATCATAAATCTGCAGCAAGAGAAGCTACGAGCAATGGATCTAAG AGACACGCTGCTAAGACTGGATGATGCTCTAAGACTAATTAACCAGACCGTTTCTTTGGTCGCCGCAAAGCTTGCAATGCCGTCTCTGGAAATGACATAA
AA sequence Show only first row Show all	>Lus10008251 pacid=23154286 polypeptide=Lus10008251 locus=Lus10008251.g ID=Lus10008251.BGIv1.0 annot-version=v1.0 MSYGASHVNPSSLTRITEPRIRSWRSDSTTTPHSLPATLPFHPSISSSNTTSSVVQSRNGAVNHLLPFNSNEVLVPPESKTLHLYEARYLALLEEALAQK KMFVHFVLDPVSVSNSGSEASLLLDTVAWSIWKVERLDVGALVSVRGIGRVKLVGFLQSEPYLRGEVMSMQDMVDSSQNAINSKVTELKDAHGKLNRLEI RLKEPALECDGAFIPSLAERVSFAALQPVSGKLNFITSHLHSFQYKGSSQSEIINLQQEKLRAMDLRDTLLRLDDALRLINQTVSLVAAKLAMPSLEMT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G35340			ATP-dependent protease La (LON...		Lus10008251 [exp]	0	1
AT5G63050		EMB2759	embryo defective 2759 (.1.2)		Lus10001245 [exp]	3.3	0.8440
AT5G20220			zinc knuckle (CCHC-type) famil...		Lus10036722 [exp]	3.7	0.8860
AT5G18570		EMB3138, ATOBGL...	EMBRYO DEFECTIVE 3138, EMBRYO ...		Lus10006128 [exp]	4.5	0.8721
AT2G30695			unknown protein		Lus10004791 [exp]	5.4	0.8247
AT1G72640			NAD(P)-binding Rossmann-fold s...		Lus10000373 [exp]	6.0	0.8751
AT1G13570			F-box/RNI-like superfamily pro...		Lus10034418 [exp]	9.6	0.8284
AT5G02180			Transmembrane amino acid trans...		Lus10024374 [exp]	11.0	0.8545
AT1G52500		ATMMH-2, ATMMH-...	FORMAMIDOPYRIMIDINE-DNA GLYCOS...		Lus10035876 [exp]	11.3	0.8225
					Lus10039070 [exp]	12.0	0.8402
AT2G30695			unknown protein		Lus10008363 [exp]	13.2	0.8825

Compare expression of checked genes

Lus10008251 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.