Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22540 573 / 0 Major facilitator superfamily protein (.1) AT1G72125 503 / 2e-173 Major facilitator superfamily protein (.1) AT1G72140 492 / 3e-169 Major facilitator superfamily protein (.1) AT1G72120 488 / 2e-167 Major facilitator superfamily protein (.1) AT1G72130 483 / 7e-166 Major facilitator superfamily protein (.1.2) AT1G22550 482 / 3e-165 Major facilitator superfamily protein (.1) AT1G22570 461 / 9e-157 Major facilitator superfamily protein (.1) AT3G54450 394 / 8e-131 Major facilitator superfamily protein (.1) AT3G54140 360 / 2e-117 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT5G01180 358 / 7e-117 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016932 [exp] 910 / 0 AT1G22540 673 / 0.0 Major facilitator superfamily protein (.1) Lus10009462 [exp] 479 / 7e-164 AT1G22540 580 / 0.0 Major facilitator superfamily protein (.1) Lus10024156 [exp] 381 / 1e-125 AT3G54450 593 / 0.0 Major facilitator superfamily protein (.1) Lus10039521 [exp] 366 / 1e-119 AT3G54450 612 / 0.0 Major facilitator superfamily protein (.1) Lus10040099 [exp] 366 / 1e-119 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10030947 [exp] 360 / 2e-117 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10035516 [exp] 357 / 3e-116 AT5G01180 913 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10039465 [exp] 354 / 1e-115 AT5G14940 489 / 1e-168 Major facilitator superfamily protein (.1) Lus10005603 [exp] 352 / 2e-114 AT5G14940 592 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G106600 [exp] 671 / 0 AT1G22540 666 / 0.0 Major facilitator superfamily protein (.1) Potri.013G107050 [exp] 658 / 0 AT1G22540 670 / 0.0 Major facilitator superfamily protein (.1) Potri.019G079551 [exp] 626 / 0 AT1G22540 662 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106500 [exp] 614 / 0 AT1G22540 644 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106400 [exp] 603 / 0 AT1G22540 632 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106700 [exp] 593 / 0 AT1G22540 612 / 0.0 Major facilitator superfamily protein (.1) Potri.019G079600 [exp] 583 / 0 AT1G22540 632 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106925 [exp] 573 / 0 AT1G22540 605 / 0.0 Major facilitator superfamily protein (.1) Potri.019G079700 [exp] 573 / 0 AT1G22540 547 / 0.0 Major facilitator superfamily protein (.1) Potri.003G197333 [exp] 413 / 3e-138 AT3G54450 663 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10008252 pacid=23154294 polypeptide=Lus10008252 locus=Lus10008252.g ID=Lus10008252.BGIv1.0 annot-version=v1.0 ATGCCCGGCAGCCAGATCGCTATCTCAAATTATATCAGCCGGCCGCCCTTCTTGGTCCCGCCGACGCCGAAATTCCACTTCTCTACGACGACACTGTTGA TGGAGCCGTCGACTACAAAGGCCAGCAGGTTCACCGTTCCAGCTCCGGCGGTTGGAGATCCGCAGCTTTTATTATCGAGATTTGCGTATTACGGGATCGG TTCAAATCTGATTACCTACTTGACGGGGCCGCTCGCCCAGTCTACGGCCGCCGCAGCTGCCAACGTGAACTCTTGGTCCGGAGCCGCTTCCTTGCTGCCT CTTTTGGGCGCTTTTGTTGCTGATACCTTCCTCGGGAAATACCGCACCATTATTGTTGCTTCTGTTGGTTACGTTTTGGGGCTTGGGTTGCTGACTTTAT CAGCTCTTCTTCCTGCGCTTGGTGTTTTTGATTGCCAAAGCCAAGTTACGAGTAGTGCAGCAGCAGCATGTCCTCCTCATCCAATTCAGATGGCTTTGTT CTTTTTCTCATTGTATCTGGTAGCACTTTCACAAGGAGGGCACAAGCCTTGTGTACAGGCATTTGGGGCAGATCAGTTCGATGGAAACGACCTTGTGGAA TGCAAAGCGAAAAGCTCCTTCAACTGGTGGTATTTTTGCATGTGTGCTGGGACCTTAGTAGCACTAGCGGTCTTAAACTATGTACAGGATAATCTTAACT GGGGTCTTGGATTTGGGATCCCGTGTCTCGTCATGGTCTTGGCCCTTATCATCTATATACTCGGGACAAGGACATATAGGTATGGAGCCACGAGCGATGA GGATAATGGATTTCTCAGAATCAGTAAGGTTTTTGGTGCAGCAATAAGAAACTGGCGTATTGATTCTTCTGCAGTTGCTCTCGAAGAAGAGTCTAGAGGA ACTCTACCCCATGAACATTCTGATCAACTCAAGTTTCTGAATAAGGCTCTACTTGCATCAGAAAGTTCAAAGGATGGTGGGAAGATATGCACTTTGAGTG AAGTTGAAGAAGCTAAGTCAGTACTTAGGCTCGTCCCAATATGGGTAACTTGCTTGGTGTACGGAATTGTGTTTGCACAGTCTACAACTTTCTTCACGAA GCAAGGATTAACCATGGATAGAACACTCTTCCCTGGTTTTGAGATTCCACCAGCTACCTTGCAATCTTTCATTACACTTGCCATTTGCATCTTCATACCG ATGTATGATGGCATCCTTGTTCCTGTAGCAAGAGCCATAACCGGAAGGCTGTCAGGCATCTCAATACTCCAAAGAATTGGAACTGGGATATTCTTGTCTA TTGTTTCCATGGTTATAGCTGCTGTCGTTGAGATCAAGAGGCTTCAAATCGCCCGGGATCATGGAATCATAGACACATCAAGTGTGAAAGTCCCAATGAG TTTCTGGTGGCTGGTTCCTCAGTACGTCTTGTACGGAATTTCAGATGTATTCACCATGGTTGGACTGCAAGAGTTCTTCTATGATCAAGTCCCTAGTGAC CTAAGGAGCATGGGCCTGTCTCTATACCTCAGTATATTTGGGGTGGGAAGCTTTCTCAGCAGCTTTCTGATATCTGCCATTGACAAAGCAACCAGCAGCG ATGGACACGACAGCTGGTTCTCCAATAACATAAACAAAGGTCATCTCGATTACTTCTATTGGCTACTTGCAGGACTGAGTGCAGTTCAACTGATCCTCTA CTTGTACTTTGCGAGATCTTATGTTTACAACAGAGGAAGCTCTGTTTAA
AA sequence Show only first row Show all	>Lus10008252 pacid=23154294 polypeptide=Lus10008252 locus=Lus10008252.g ID=Lus10008252.BGIv1.0 annot-version=v1.0 MPGSQIAISNYISRPPFLVPPTPKFHFSTTTLLMEPSTTKASRFTVPAPAVGDPQLLLSRFAYYGIGSNLITYLTGPLAQSTAAAAANVNSWSGAASLLP LLGAFVADTFLGKYRTIIVASVGYVLGLGLLTLSALLPALGVFDCQSQVTSSAAAACPPHPIQMALFFFSLYLVALSQGGHKPCVQAFGADQFDGNDLVE CKAKSSFNWWYFCMCAGTLVALAVLNYVQDNLNWGLGFGIPCLVMVLALIIYILGTRTYRYGATSDEDNGFLRISKVFGAAIRNWRIDSSAVALEEESRG TLPHEHSDQLKFLNKALLASESSKDGGKICTLSEVEEAKSVLRLVPIWVTCLVYGIVFAQSTTFFTKQGLTMDRTLFPGFEIPPATLQSFITLAICIFIP MYDGILVPVARAITGRLSGISILQRIGTGIFLSIVSMVIAAVVEIKRLQIARDHGIIDTSSVKVPMSFWWLVPQYVLYGISDVFTMVGLQEFFYDQVPSD LRSMGLSLYLSIFGVGSFLSSFLISAIDKATSSDGHDSWFSNNINKGHLDYFYWLLAGLSAVQLILYLYFARSYVYNRGSSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22540			Major facilitator superfamily ...		Lus10008252 [exp]	0	1
AT1G77280			Protein kinase protein with ad...		Lus10039518 [exp]	3.2	0.9305
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10022591 [exp]	10.4	0.9271
AT1G27170			transmembrane receptors;ATP bi...		Lus10005171 [exp]	12.4	0.9180
AT1G30540			Actin-like ATPase superfamily ...		Lus10033600 [exp]	13.1	0.9055
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10021489 [exp]	15.4	0.9246
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10039599 [exp]	16.6	0.9233
AT1G30540			Actin-like ATPase superfamily ...		Lus10017642 [exp]	18.0	0.8818
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10002484 [exp]	18.5	0.9242
AT5G27400			S-adenosyl-L-methionine-depend...		Lus10031516 [exp]	19.6	0.9075
AT1G68940			Armadillo/beta-catenin-like re...		Lus10013050 [exp]	21.2	0.9203

Compare expression of checked genes

Lus10008252 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.