Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G35470 309 / 4e-102 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) AT4G09340 273 / 2e-88 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) AT4G09310 140 / 5e-38 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) AT4G09200 140 / 5e-38 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) AT4G09250 98 / 6e-23 SPla/RYanodine receptor (SPRY) domain-containing protein (.1) AT1G06060 55 / 1e-08 LisH and RanBPM domains containing protein (.1) AT1G61150 46 / 1e-05 LisH and RanBPM domains containing protein (.1.2.3.4.5.6.7)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001544 [exp] 350 / 1e-117 AT1G35470 604 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10009451 [exp] 257 / 3e-81 AT1G35470 601 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10009445 [exp] 79 / 2e-16 AT1G35470 188 / 4e-56 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10020191 [exp] 75 / 2e-15 AT1G35470 69 / 2e-13 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10009316 [exp] 70 / 4e-13 AT1G35470 197 / 7e-59 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10020190 [exp] 65 / 2e-11 AT1G35470 167 / 1e-48 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10006084 [exp] 53 / 3e-07 AT1G35470 101 / 7e-23 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Lus10004152 [exp] 51 / 3e-07 AT1G06060 275 / 2e-94 LisH and RanBPM domains containing protein (.1) Lus10002729 [exp] 49 / 3e-07 AT1G35470 81 / 8e-19 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G080800 [exp] 334 / 3e-112 AT1G35470 610 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Potri.013G108400 [exp] 328 / 2e-109 AT1G35470 607 / 0.0 SPla/RYanodine receptor (SPRY) domain-containing protein (.1), SPla/RYanodine receptor (SPRY) domain-containing protein (.2) Potri.011G046200 [exp] 54 / 4e-08 AT1G61150 383 / 3e-136 LisH and RanBPM domains containing protein (.1.2.3.4.5.6.7) Potri.004G037600 [exp] 51 / 2e-07 AT1G61150 384 / 3e-137 LisH and RanBPM domains containing protein (.1.2.3.4.5.6.7) Potri.002G029700 [exp] 41 / 0.0007 AT1G06060 283 / 1e-97 LisH and RanBPM domains containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10607 [flax] [poplar] CLTH CTLH/CRA C-terminal to LisH motif domain
Representative CDS sequence Show only first row Show all	>Lus10008254 pacid=23154287 polypeptide=Lus10008254 locus=Lus10008254.g ID=Lus10008254.BGIv1.0 annot-version=v1.0 ATGAGCGTCCCCGGCGGCAGCAGTAGCAACAATGGCGACGTTCGCAACAAAGATATCGATTCATACTTCCTCGGTCTGGCTCGCCTCGCCTCCGGTAAGC TTCCCCCGAGCCCGGAAGAGAGAGTCTACGGCGGGGACTATGAGCCAAAGGAGCTCAATCCGATCAACAGCTCTGGTGGATTTGCTGTGATTTCCACGGA TCAGCTTTCAGTTAAGTACCCGAACGTCGACCGTCACAAGTACGACGTCGGAGTCGTCCAGGCTAACAAGCTTGCCCCCTTTAGTTGGCCCTTGTACTAC TTCGAGATGCATGTGAAGAATGGCGGCGCTAAGGGAAAAATGGCGATTGGATTCAGTAGCGAGAATTTCAAGATGACGAGGCAGCCCGGTAAAAACGGAT CGTATGTCGGAGAATTGAAGAAGCTGAACCTATGTCCCTTATTCCCTACAGTTTCTGTTCATAGCCAGAATGAGGAGCTCATCCGTTCATACTTGCTGCA ATTCGGGTATGCAGAAACTCTCAATTCACTTGAGTTGGATAGCAAAAGTACATTTCCTCTGCTGTACATGTCTCAGGAAGATGTCTATGATGCACAAAAC GTGGTGTATGCATCTGATCAGAGGAGCGAACTTGGACAGTTAATCAAGAATGGAAAGATTGATGCTACTATTTCCAAACTTCGTGAGTGGTTTCCACAGA TTCTTGAGGATGCAAAATCAGCTACTTGCTTTCTGCTCTACTGTCAGAAGTTTATTGAGTTAGTTCGAGATGGTAAACTAGAGGAAGCTTCAAAGTGTGC AAGTGTTGAATTAGGAAAGTTCTCTGGGTTAGTGGACTATGATGACTTGATTAAGGATTGTGCAGCTTTGCTGGCATATGAGAAACCAATGGAGTCATCG TCGGGATATCTTCTTGAAGAATGGCAGCGTACCGTTGTGGCAGATGCTGTTAATGCAATGATTTTGTTAACAAATCCAAAGGGCGGGAAATTCTTAACAG AGTGCTTGGAGTCGTATATGGAAAGGTTGGTAAGGCAGCTGATGGATTTGTGCTATGTGGAGAAAAGATACGGGAATGTGAAGAACTAA
AA sequence Show only first row Show all	>Lus10008254 pacid=23154287 polypeptide=Lus10008254 locus=Lus10008254.g ID=Lus10008254.BGIv1.0 annot-version=v1.0 MSVPGGSSSNNGDVRNKDIDSYFLGLARLASGKLPPSPEERVYGGDYEPKELNPINSSGGFAVISTDQLSVKYPNVDRHKYDVGVVQANKLAPFSWPLYY FEMHVKNGGAKGKMAIGFSSENFKMTRQPGKNGSYVGELKKLNLCPLFPTVSVHSQNEELIRSYLLQFGYAETLNSLELDSKSTFPLLYMSQEDVYDAQN VVYASDQRSELGQLIKNGKIDATISKLREWFPQILEDAKSATCFLLYCQKFIELVRDGKLEEASKCASVELGKFSGLVDYDDLIKDCAALLAYEKPMESS SGYLLEEWQRTVVADAVNAMILLTNPKGGKFLTECLESYMERLVRQLMDLCYVEKRYGNVKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10008254 [exp]	0	1
AT5G48385			FRIGIDA-like protein (.1)		Lus10004132 [exp]	1.7	0.8790
AT3G15990		SULTR3;4	sulfate transporter 3;4 (.1)		Lus10035896 [exp]	6.3	0.8404
AT2G16850		PIP3B, PIP2;8	PLASMA MEMBRANE INTRINSIC PROT...		Lus10027467 [exp]	7.1	0.8631
AT2G28630		KCS12	3-ketoacyl-CoA synthase 12 (.1...		Lus10004918 [exp]	7.5	0.8429
					Lus10004133 [exp]	7.9	0.8232
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10006610 [exp]	14.1	0.8338
AT3G58100		PDCB5	plasmodesmata callose-binding ...		Lus10002193 [exp]	19.0	0.8025
AT5G45950			GDSL-like Lipase/Acylhydrolase...		Lus10005279 [exp]	19.7	0.8333
					Lus10035486 [exp]	20.6	0.8111
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10018351 [exp]	21.4	0.8060

Compare expression of checked genes

Lus10008254 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.