Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012087 [exp] 294 / 2e-97 AT1G17930 57 / 4e-09 Aminotransferase-like, plant mobile domain family protein (.1) Lus10015702 [exp] 261 / 2e-85 ND 38 / 0.004 Lus10032804 [exp] 251 / 2e-81 ND / Lus10010402 [exp] 247 / 3e-80 ND / Lus10003272 [exp] 212 / 2e-66 ND 39 / 0.002 Lus10038548 [exp] 170 / 6e-50 ND / Lus10040026 [exp] 162 / 2e-48 AT1G48120 45 / 3e-06 hydrolases;protein serine/threonine phosphatases (.1) Lus10007197 [exp] 157 / 2e-46 ND / Lus10000686 [exp] 158 / 1e-45 AT1G17930 87 / 3e-20 Aminotransferase-like, plant mobile domain family protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10536 [flax] [poplar] PMD Plant mobile domain
Representative CDS sequence Show only first row Show all	>Lus10008255 pacid=23154284 polypeptide=Lus10008255 locus=Lus10008255.g ID=Lus10008255.BGIv1.0 annot-version=v1.0 ATGGTTCGACTGCAGGGTAGGGTAGGAGATGCGTTACCTGGCAGGTGGGACAGTGCAGAGACACCTAGTTGGGGTGGCGGAGTCCTACGAGAGAGGTTGG ACTACTATCGACGCCTCCTCGATAACATGGACCCCCGTGATGTGATTTGGCTTCCTTTTGGGCCACATCCCGACGTTGAGGTCCCTATGTCGACTTTTCG TGGACTCATCCACTACGCTGACGTAGGTGAGTACTACGATTCCTATCGTGTACTCCGCCAGTTTGGGTACACTCAGGTTGTCCCTCTCTCGATTGTTGTG CCGCTGCGGGCTAGCAGGCCCCCCGCGATCCGGACCTATGTTGTCCAGTGGGCCCCAAATGAGGATAGGACTAGGTCGAAGCAGGACTTCATCAGATTTC ACCGGCTACACCTTATGTTCGAGAGTGAAGTGTCCCGGGCGGATGTTGCTCCAGGGTACATGGACTGGTACGTCAAGCACAGGCACCCGTGCATCGTAGC ACCGACCAACCTCGGTGTAGATGTCCCATATGAGATTCGAGTCTTCGATGGTATGGCCTCCTACTTCGATGATACGCTTGGGCGGCAGCACGCGCACTCG CCTCAAGAGTACTACGACCATATCGAGGGGCTTGAAGAAACAACTCGACATGAAGTTTTCGAGTTTCGGGATATAGTGGAGTCGGACAATCGAATAGTGT TCGAGTTGAAGAATCGAGTGAAGGCAAGGGCAGGCACAGTAAAGGCTCTGTACATTCGCAGACACATCTCCATTCAGATTTCAATTCATCACTTTACTTG TTTAGTCACTCAGTGTCATGAGGTCATCCCCAAAGAAAATGAAGAGCCTAGACAAGGTCCAATCACTTGTTCACAAACGACAGCTTTCAAGGAGAAGATC AATGCATATCTAGACGAGTGGAGTCAACACAAGCATTACGAGGACGAACACGCCCTAAAGGACATGAAGACCATCATCACCTGGAATCTAGATGATACTG GAGCATTCGGAGAAGAAGAAAACCAAGGAGCCATGACGTCAGCCCTAACCGACATCGGCATCAACATCCGCACCGTGGCCGCACCCAAAAATCAAGATCT TTACTCCGGGATAACTTTTCCCACTATCTTTGGAGAAAAGGTTAGGAATCATGAAAAAGACGTTTCCCTAAGTTTGGAACCATTTAGAGCACAATCGAGT CCAAAGGTGCGAAATTACTTGAAATCGGGTCCACCTATTTCAGAGGATTGCACCAAATCGCACCTTGGCCCAAACGAGAAGACTTTTCCCGCAACATCTC TGTACCAGGAGATTCATGGACCATATGAAGACCATCTAGGGAGTTGGAAGCAAGGAGAAATGAGTATGTGGTCGAAGCCCACAAGTGGACGCGTTATGGT AAAGTCGGAGCCTCCGAAGCGAGGCCTCTTCAACAATTTTGAGCCCGGACCAATTTAG
AA sequence Show only first row Show all	>Lus10008255 pacid=23154284 polypeptide=Lus10008255 locus=Lus10008255.g ID=Lus10008255.BGIv1.0 annot-version=v1.0 MVRLQGRVGDALPGRWDSAETPSWGGGVLRERLDYYRRLLDNMDPRDVIWLPFGPHPDVEVPMSTFRGLIHYADVGEYYDSYRVLRQFGYTQVVPLSIVV PLRASRPPAIRTYVVQWAPNEDRTRSKQDFIRFHRLHLMFESEVSRADVAPGYMDWYVKHRHPCIVAPTNLGVDVPYEIRVFDGMASYFDDTLGRQHAHS PQEYYDHIEGLEETTRHEVFEFRDIVESDNRIVFELKNRVKARAGTVKALYIRRHISIQISIHHFTCLVTQCHEVIPKENEEPRQGPITCSQTTAFKEKI NAYLDEWSQHKHYEDEHALKDMKTIITWNLDDTGAFGEEENQGAMTSALTDIGINIRTVAAPKNQDLYSGITFPTIFGEKVRNHEKDVSLSLEPFRAQSS PKVRNYLKSGPPISEDCTKSHLGPNEKTFPATSLYQEIHGPYEDHLGSWKQGEMSMWSKPTSGRVMVKSEPPKRGLFNNFEPGPI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48120			hydrolases;protein serine/thre...		Lus10008255 [exp]	0	1
AT2G15220			Plant basic secretory protein ...		Lus10019802 [exp]	4.7	0.8899
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Lus10009726 [exp]	4.9	0.8780
AT5G27260			unknown protein		Lus10007175 [exp]	5.0	0.8923
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Lus10024256 [exp]	5.3	0.7884
					Lus10005514 [exp]	7.1	0.8923
AT2G36190		ATCWINV4	cell wall invertase 4 (.1)		Lus10017015 [exp]	8.7	0.8923
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Lus10010054 [exp]	9.8	0.7512
AT3G60730			Plant invertase/pectin methyle...		Lus10015877 [exp]	10.0	0.8923
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Lus10016888 [exp]	11.2	0.8923
AT1G61320			FBD / Leucine Rich Repeat doma...		Lus10010664 [exp]	12.2	0.8923

Compare expression of checked genes

Lus10008255 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.