Plant FIBer expression Database

Lus10008257 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G72040 597 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016950
[exp]
972 / 0 AT1G72040 606 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G081600
[exp]
721 / 0 AT1G72040 630 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Potri.013G109400
[exp]
707 / 0 AT1G72040 639 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF01712 dNK Deoxynucleoside kinase
Representative CDS sequence
>Lus10008257 pacid=23154282 polypeptide=Lus10008257 locus=Lus10008257.g ID=Lus10008257.BGIv1.0 annot-version=v1.0
ATGCCCTCCCACGCCGCCGCTTTATCCTCTTCCGTCTCCTCCCCCACCGCCGCCGCTTTCGCTCGCAAACCCTCCTCCCCCAAATCTGCCGCCATATCTC
GCTCCTATTACACCGCCTGCCGCGCCGCAATTGACGGCCGGAGAACTGCAGCCGGGACCCCTCTCTGCGCCTGGCAGGTCGGCCGCTCCGTCTTCCACCG
TACGCTCTCAGCAGCGGAGGCCTTGTTGTCTTCTTCTTCTTCATCTTCCTCCGTCACGGCTGAGGATGTATTTAAGGCAGAAGAGAAGCCGGCGAAGATA
GGGCGACGACAGAAGGCTTCCAGTGACGTGGAAGGTAACGAAGATTTGCTGACAATCCCTGGTGTTGGTCCTAAGAACTTGAGGAAACTGGTGGAGAAAG
GGTTGCGAGGTATGGCTGAGCTCAAACAGCTGTATAAGGACAAGTTTCTAGGGAAAGAAACTGAGACAATGGTGGAGTATCTGAAGAGTTCAGTAGGGAT
TATCCATCGTACTCATGCCGAGAGCATCACTAGTTACGTTAAAGAGAGTGTGGATGAGGAGTTGAAAGATGTGAACTCTGATGATGTCAACAATATGATT
ACGAAAAAACAACGGATTACCTTCTGCGTTGAAGGAAACATAAGTGTTGGAAAGACTACTTTCCTTCAGAGAATAGTTAGTGATACAATTGAGCTTAGGG
ACTTAGTAGAGGTGGTGCCTGAACCCATTGATAAGTGGCAGGACATTGGACCTGACCACTTCAACATACTGGATGCCTTCTATGCTCAACCCGACAGGTA
TGCCTATACCTTCCAGAACTATGTTTTCGTCACCAGGGTTATGCAAGAGCGAGAGTCCTCTGTTGGCCTCAAGCCCCTTAGGCTCATGGAGCGAAGCGTT
TTCAGTGACAGAATGGTGTTTGTACGAGCTGTGCATGAAGCAAAGTGGATGAATGAGATGGAGATCAGCATCTATGACTCTTGGTTTGATCCAGTTGTAT
CGGTTCTTCCTGGTCTTGTGCCAGATGGGTTCATCTATCTGAGGGCAACCCCTGATACTTGCCACAAGAGAATGAAGCATCGTCAGAGGGCAGAAGAGGG
TGGAGTCTCCCTACATTATCTTCGTGGCTTGCATGAAAAGCACGAGAGCTGGCTTTTCCCCATGGAAACTGGTAATCATGGGGTTTTCTCAGTCGGTAGG
CCTCCTTTACAACTGGATAGCTCTATTCATCCTGATATTAGGGATCAAGTGTTTTTCCTTGAAGGTGATCACATGCATTCCAGCATTCAGAAAGTTCCTG
CGCTTGTTCTTGATTGTGAAGCCAACATAGATCTTAACAAAGATACTGAAGCAAAAGAGCACTATGCGCGCCAGGTTTCTGCATTCTTCAAGTACGTGAA
GCAAATGAAAGAAGTTCTGCCGACGCCTGGTGCTGGCGCCCCGAACACCAAACCACGACAAATCATACTGCCTCGTGAAGGCGGGTTGCTACTACCGAAT
GGGAAGCACTTTGATGAATCTGCTCTCAAGTCTCTGGATTTTCGACGCTCAATATCCCTCATGTCTAGCCAATGA
AA sequence
>Lus10008257 pacid=23154282 polypeptide=Lus10008257 locus=Lus10008257.g ID=Lus10008257.BGIv1.0 annot-version=v1.0
MPSHAAALSSSVSSPTAAAFARKPSSPKSAAISRSYYTACRAAIDGRRTAAGTPLCAWQVGRSVFHRTLSAAEALLSSSSSSSSVTAEDVFKAEEKPAKI
GRRQKASSDVEGNEDLLTIPGVGPKNLRKLVEKGLRGMAELKQLYKDKFLGKETETMVEYLKSSVGIIHRTHAESITSYVKESVDEELKDVNSDDVNNMI
TKKQRITFCVEGNISVGKTTFLQRIVSDTIELRDLVEVVPEPIDKWQDIGPDHFNILDAFYAQPDRYAYTFQNYVFVTRVMQERESSVGLKPLRLMERSV
FSDRMVFVRAVHEAKWMNEMEISIYDSWFDPVVSVLPGLVPDGFIYLRATPDTCHKRMKHRQRAEEGGVSLHYLRGLHEKHESWLFPMETGNHGVFSVGR
PPLQLDSSIHPDIRDQVFFLEGDHMHSSIQKVPALVLDCEANIDLNKDTEAKEHYARQVSAFFKYVKQMKEVLPTPGAGAPNTKPRQIILPREGGLLLPN
GKHFDESALKSLDFRRSISLMSSQ

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G72040 P-loop containing nucleoside t... Lus10008257
[exp]
0 1
AT3G16290 EMB2083 embryo defective 2083, AAA-typ... Lus10011432
[exp]
1.4 0.9271
AT3G16290 EMB2083 embryo defective 2083, AAA-typ... Lus10037574
[exp]
2.8 0.9084
AT1G09130 ATP-dependent caseinolytic (Cl... Lus10020649
[exp]
3.5 0.8936
AT5G16620 PDE120, TIC40, ... pigment defective embryo 120, ... Lus10004053
[exp]
3.9 0.8904
AT1G28530 unknown protein Lus10015294
[exp]
4.5 0.8697
AT3G17970 ATTOC64-III translocon at the outer membra... Lus10009682
[exp]
4.9 0.8787
AT5G49910 CPHSC70-2EATSHO... HEAT SHOCK PROTEIN 70-7, chlor... Lus10039044
[exp]
8.5 0.8585
AT1G06220 GFA1, CLO, MEE5 MATERNAL EFFECT EMBRYO ARREST ... Lus10043478
[exp]
10.4 0.9001
AT1G29370 Kinase-related protein of unkn... Lus10007339
[exp]
10.8 0.8495
AT1G14810 semialdehyde dehydrogenase fam... Lus10030759
[exp]
11.5 0.8697

Lus10008257 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.