Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017044 [exp] 369 / 1e-129 ND / Lus10003428 [exp] 368 / 1e-129 ND / Lus10032803 [exp] 367 / 2e-129 ND / Lus10005604 [exp] 366 / 3e-129 ND / Lus10039943 [exp] 332 / 5e-115 ND / Lus10000774 [exp] 314 / 4e-109 ND / Lus10029529 [exp] 301 / 5e-101 ND / Lus10035107 [exp] 247 / 1e-83 ND / Lus10040057 [exp] 245 / 1e-82 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008258 pacid=23154290 polypeptide=Lus10008258 locus=Lus10008258.g ID=Lus10008258.BGIv1.0 annot-version=v1.0 ATGGTTCAGACTATTTGCTCTAGAGGGGGGCCATCCGTCCGGGAGCTGAGTCGATTAGTTTGGTCAGCATTTCAACCCGAGTCTAAAGGTTTCAAGGAAC CGAAGGTTGCCGATGCTCCTAAAGGCCGACCGCGTGCAAGAAAGACCGATCGTCGAAATCCTTCTTGGCATGAGCATGCTAGTGTGCATTGTACTCCTCC CAAGAGCAGAGGTAGCTCAACTAGATCTACACCTTCCTCGAAGGGTATTCCTTCGAACACGGGCCCGACTCCGACCTCATCACTTCCAACTGGTGTTCGT CCGTTTCGGAGGTACATCCTGGCGGGTATGCACCCTGTGCTAGGTGATGTGTTCAACCCACGTGGGGATGGACATTGCGGATTTCGGTGCATTTCATACA TAGTTACGACTGATGACGATAGTCAGTATGTGGACATGCGGAGGCGTCTAATGGAACATGTTTCGCGGAACTGGTACGAACTATACATTAATGTGTATAT CACTAACTTGAACGGCGTCATTCACCGATTGGGTTGGCTATGGGAAACAACATGTGATGAATCATGGTGGTTTTGGAACGTGGATCTTCTAGGGTATGCC ACCATATTTAACTGGACTTTCGTTGTCTTCGGACCTGGATTGCGAGGGGTACCCTATGGGGAGACACACCTACCGTTGATTGTACAAGACGGCACCACGA CACCAAGAGGTGTGTCGTATAGTGTGTATCGGGAATCACTAGGTCGTGCTCACTTTAGATGA
AA sequence Show only first row Show all	>Lus10008258 pacid=23154290 polypeptide=Lus10008258 locus=Lus10008258.g ID=Lus10008258.BGIv1.0 annot-version=v1.0 MVQTICSRGGPSVRELSRLVWSAFQPESKGFKEPKVADAPKGRPRARKTDRRNPSWHEHASVHCTPPKSRGSSTRSTPSSKGIPSNTGPTPTSSLPTGVR PFRRYILAGMHPVLGDVFNPRGDGHCGFRCISYIVTTDDDSQYVDMRRRLMEHVSRNWYELYINVYITNLNGVIHRLGWLWETTCDESWWFWNVDLLGYA TIFNWTFVVFGPGLRGVPYGETHLPLIVQDGTTTPRGVSYSVYRESLGRAHFR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10008258 [exp]	0	1
					Lus10012497 [exp]	1.7	0.7363
AT5G52290		SHOC1	shortage in chiasmata 1 (.1)		Lus10014981 [exp]	5.7	0.6247
					Lus10036778 [exp]	7.6	0.6517
AT5G16780		MDF, DOT2	MERISTEM-DEFECTIVE, DEFECTIVEL...		Lus10032078 [exp]	18.4	0.6225
AT2G33580			Protein kinase superfamily pro...		Lus10022490 [exp]	20.2	0.5927
AT3G26950			unknown protein		Lus10035181 [exp]	26.0	0.6086
AT5G52975			Protein of unknown function (D...		Lus10027141 [exp]	47.9	0.5546
AT1G20470			SAUR-like auxin-responsive pro...		Lus10020432 [exp]	138.0	0.5004
					Lus10014748 [exp]	141.1	0.4869
AT2G02850		ARPN	plantacyanin (.1)		Lus10028396 [exp]	141.4	0.4869

Compare expression of checked genes

Lus10008258 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.