Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77410 890 / 0 BGAL16 beta-galactosidase 16 (.1) AT5G63800 797 / 0 MUM2, BGAL6 MUCILAGE-MODIFIED 2, beta-galactosidase 6, Glycosyl hydrolase family 35 protein (.1) AT3G13750 670 / 0 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1) AT4G35010 668 / 0 BGAL11 beta-galactosidase 11 (.1) AT2G16730 664 / 0 BGAL13 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) AT4G36360 650 / 0 BGAL3 beta-galactosidase 3 (.1.2) AT2G28470 630 / 0 BGAL8 beta-galactosidase 8 (.1.2) AT4G26140 630 / 0 BGAL12 beta-galactosidase 12 (.1.2) AT1G45130 600 / 0 BGAL5 beta-galactosidase 5 (.1) AT4G38590 598 / 0 BGAL14 beta-galactosidase 14 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028538 [exp] 875 / 0 AT1G77410 967 / 0.0 beta-galactosidase 16 (.1) Lus10018138 [exp] 858 / 0 AT1G77410 928 / 0.0 beta-galactosidase 16 (.1) Lus10033427 [exp] 814 / 0 AT1G77410 1016 / 0.0 beta-galactosidase 16 (.1) Lus10033502 [exp] 776 / 0 AT5G63800 844 / 0.0 MUCILAGE-MODIFIED 2, beta-galactosidase 6, Glycosyl hydrolase family 35 protein (.1) Lus10020875 [exp] 719 / 0 AT5G63800 785 / 0.0 MUCILAGE-MODIFIED 2, beta-galactosidase 6, Glycosyl hydrolase family 35 protein (.1) Lus10019784 [exp] 694 / 0 AT2G16730 1052 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Lus10020877 [exp] 692 / 0 AT2G16730 733 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Lus10033500 [exp] 682 / 0 AT5G63800 757 / 0.0 MUCILAGE-MODIFIED 2, beta-galactosidase 6, Glycosyl hydrolase family 35 protein (.1) Lus10005071 [exp] 677 / 0 AT2G16730 1050 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G105100 [exp] 1005 / 0 AT1G77410 1053 / 0.0 beta-galactosidase 16 (.1) Potri.005G180600 [exp] 908 / 0 AT1G77410 1051 / 0.0 beta-galactosidase 16 (.1) Potri.002G080700 [exp] 870 / 0 AT1G77410 1115 / 0.0 beta-galactosidase 16 (.1) Potri.005G069200 [exp] 817 / 0 AT5G63800 962 / 0.0 MUCILAGE-MODIFIED 2, beta-galactosidase 6, Glycosyl hydrolase family 35 protein (.1) Potri.009G134400 [exp] 709 / 0 AT2G16730 1098 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Potri.004G174800 [exp] 701 / 0 AT2G16730 1115 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Potri.003G038500 [exp] 656 / 0 AT3G13750 1484 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.001G200400 [exp] 653 / 0 AT3G13750 1471 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.005G232600 [exp] 652 / 0 AT4G36360 1332 / 0.0 beta-galactosidase 3 (.1.2) Potri.007G018100 [exp] 650 / 0 AT4G36360 1499 / 0.0 beta-galactosidase 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF01301 [flax] [poplar] Glyco_hydro_35 Glycosyl hydrolases family 35
Representative CDS sequence Show only first row Show all	>Lus10008259 pacid=23154285 polypeptide=Lus10008259 locus=Lus10008259.g ID=Lus10008259.BGIv1.0 annot-version=v1.0 ATGGTGATGATATTAGCTGAACTCGTAAATGCAGCCTTGATTATGGTTGCTGCTTTAGTGGCAAGTTACGCAGTCACCGGCGCCGGTGGAGAGGTAACGT ACGACGGCAGGTCATTGATAATCGGCGGCCAAAGGAAGATTCTGTTTTCCGGTTCCATACATTACCCAAGAAGTACACCGGAGATGTGGCCAACAATGAT CAGCAAAGCCAAAGAGGGAGGGATTGACGTTATTGCAACCTATGTTTTCTCCAACCTTCATGAGCCCAAACCTGGTCAGTATGACTTCAGTGGAGGGCTT GACTTGATTGGATTCGTAAAGGAGGTGCAGGCACAGGGTCTCTATGTTTTTCTTAGAATTGGTCCCTTCATTGAGGCTGAACGTTCTTATGGAGGCTTGC CAATTTGGTTACGCGATATTCCTGGCATTGTTTTCAGATGTGACAATGATCCATACAAGGCTTATATGCAAAACTTCACAACCACGATAGTGACGATGCT GCAAACCCAGAACTTGTTCGCTTCGCAGGGAGGCCCCATCATATTATCACAGATTGAGAACGAATATACAAACGTAGAAAGCGCATACGGGGAAAAGGGG AAATCGTACCTCCAATGGGTTGCACAAATGGCCGTAGGACTCAACACCGGCGTCCCCTGGGTTATGTGCAAACAAGACGACGCTCCTGATCCTTTGATAA ATGCATGCAACGGAAAGAAATGTGGAGAGACGTTTGTGGGACCCAACTCTCCAAACAAACCGGCTATATGGACCGAAAACTGGACCACACGCTATCAGGT ATACGGGGAAGATGCAGTGGTGAGATCTGCAACAGACATAGCCTATCACACCTTGCTTTTCATTCTTGCCAAAAATGGAACCTTCATTAATTACTACATG TATCACGGAGGATCTAACTTTGGGAGGTCAGCATCTGCATTCGTGACCACAAATTACTACGATTTGGCACCCATCGATGAGTATGGGATGGAGAGACAAA CGAAATGGGGCCATCTCAAGGAGCTACATGCTGCAGTGAAGTCGTGTGCTGGGCCATTGCTTTCAGGCCTGCAAGTCAATTACCCTGTAGGCCCAAACCA ATGGGCATATGTGTACAACAATGGTGAAACAGGGGAGTGTGATACAGCGTTTTTGGTTAACCGTGAAAAGCATGGCAACACTTCTGTTTCAGTCACGTTT CAACATGCTTCATACGAGCTCCCTCCCAAATCAATCAGCATCTTGCCCGACTGCAAGAACGTAGCATTCAATACCGCAGAGGTAGAAACTCAACCCAACT CGAGAGCAATGAGTAGAAGCGAGGTGTTGGACAGACCGGAAATGTGGGAAGAGTACAGGGAAGTGGTTCCAAGCTTCGACGATACGACGTCACTTAGATC ACAAAAGCTGCTGGACCACATTTCAACCACCAAAGATGCTTCTGATTACCTTTGGTATACATTTAGGTATGAGAAGCAGCAGGATAACTGGAGCAATAAC TCAGCTTTACTAAATGTGAGCTCTTTAGGCCATGCTCTGCATGCATTCATCAATGGCCGACACATAGGATCGGGTCATGGAAGTCATCAAGTGCCCAAGT TCAGCCTCCTTGTTGAAATTCCTCCCGACGCCATTATTGATGGAATTAACAATATCACTTTGTTGAGCGTCTCTGTAGGATTGCCCGATTCTGGAGCATA TCAAGAGCGAGCGGCTTTAGGACCTGTGAAAGTTGTCATCATTGATACTAATCAAGTTAGCCATGATTTCACAAGATATTCTTGGGGATATCAGGTAGGA ATGTTGGGGGATAGATTACAAATATTTAGTGAGCAAGGAGCAGGGCAGGTTGAGTGGAAAAGCTTTTCCAATGCATTCAATCCAATTACTTGGTACAAGA CGAGCTTTGATGCACCATTGGGAGATTCCCCAATTGCACTAAACTTGGGTTCCATGGCCAAGGGTGAAGCCTGGGTTAATGGCCAAAGTATCGGCCGATT TTGGCCCTCTTATCACACCCCGAATGGTTCATCACAAACTTGGTATCATGTGCCAAGATCATGGGTGAACCCCAATGGTAACATTTTAGTAGTACTAGAG GAAGAAGGTGGGAACCCACTAAATATAACTGTGGATACAGTAGCAATTACAGCCCAAATTTGCAGCCTTGTGGGTGAAGAAGCTGCCGGGGGCATCAACT CTCGTAACCGTAGGGGCAGCAGCAGCAGCAGCAGCAGCAGTAAAAGTAAAGGTATTGGTTTGAAGCTGCGTTGTCCTTCAAGGACAAAGATCTCCAAAAT AACCTTTGCAAGCTATGGGACTCCTATTGGAAGTTGTGGCACTACTAGTATGCTAACGTCTGCTCATAATTACATGGAAGGATCTTGTCATTCTTTCAAC TCCATACCCACCCTTGAAAAGTTGGAGTCAGAATTCCAAGACAGAGAAATAGCTTTTGGACCCTATGTAGAAAGCATGTACAAATCTTAG
AA sequence Show only first row Show all	>Lus10008259 pacid=23154285 polypeptide=Lus10008259 locus=Lus10008259.g ID=Lus10008259.BGIv1.0 annot-version=v1.0 MVMILAELVNAALIMVAALVASYAVTGAGGEVTYDGRSLIIGGQRKILFSGSIHYPRSTPEMWPTMISKAKEGGIDVIATYVFSNLHEPKPGQYDFSGGL DLIGFVKEVQAQGLYVFLRIGPFIEAERSYGGLPIWLRDIPGIVFRCDNDPYKAYMQNFTTTIVTMLQTQNLFASQGGPIILSQIENEYTNVESAYGEKG KSYLQWVAQMAVGLNTGVPWVMCKQDDAPDPLINACNGKKCGETFVGPNSPNKPAIWTENWTTRYQVYGEDAVVRSATDIAYHTLLFILAKNGTFINYYM YHGGSNFGRSASAFVTTNYYDLAPIDEYGMERQTKWGHLKELHAAVKSCAGPLLSGLQVNYPVGPNQWAYVYNNGETGECDTAFLVNREKHGNTSVSVTF QHASYELPPKSISILPDCKNVAFNTAEVETQPNSRAMSRSEVLDRPEMWEEYREVVPSFDDTTSLRSQKLLDHISTTKDASDYLWYTFRYEKQQDNWSNN SALLNVSSLGHALHAFINGRHIGSGHGSHQVPKFSLLVEIPPDAIIDGINNITLLSVSVGLPDSGAYQERAALGPVKVVIIDTNQVSHDFTRYSWGYQVG MLGDRLQIFSEQGAGQVEWKSFSNAFNPITWYKTSFDAPLGDSPIALNLGSMAKGEAWVNGQSIGRFWPSYHTPNGSSQTWYHVPRSWVNPNGNILVVLE EEGGNPLNITVDTVAITAQICSLVGEEAAGGINSRNRRGSSSSSSSSKSKGIGLKLRCPSRTKISKITFASYGTPIGSCGTTSMLTSAHNYMEGSCHSFN SIPTLEKLESEFQDREIAFGPYVESMYKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Lus10008259 [exp]	0	1
AT5G20260			Exostosin family protein (.1)		Lus10005186 [exp]	5.2	0.8539
AT5G14920			Gibberellin-regulated family p...		Lus10014519 [exp]	10.5	0.8113
AT2G45750			S-adenosyl-L-methionine-depend...		Lus10005764 [exp]	11.7	0.8268
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10027989 [exp]	21.5	0.7452
AT5G06300		LOG7	LONELY GUY 7, Putative lysine ...		Lus10029425 [exp]	23.0	0.7880
AT1G32100		ATPRR1	pinoresinol reductase 1 (.1)		Lus10012147 [exp]	24.1	0.7544
AT3G05390			unknown protein		Lus10004494 [exp]	24.7	0.8233
AT5G39820	NAC	ANAC094	NAC domain containing protein ...		Lus10037178 [exp]	34.2	0.8167
AT1G73340			Cytochrome P450 superfamily pr...		Lus10031295 [exp]	34.5	0.7616
AT4G12010			Disease resistance protein (TI...		Lus10004075 [exp]	44.0	0.7863

Compare expression of checked genes

Lus10008259 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.