Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31200 554 / 0 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.2), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016927 [exp] 968 / 0 AT4G31200 587 / 0.0 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.2), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.3) Lus10000866 [exp] 51 / 3e-06 AT5G23080 829 / 0.0 TOUGH, SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.2) Lus10009612 [exp] 51 / 3e-06 AT5G23080 835 / 0.0 TOUGH, SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G002000 [exp] 659 / 0 AT4G31200 620 / 0.0 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.2), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.3) Potri.006G279800 [exp] 652 / 0 AT4G31200 579 / 0.0 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.2), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.3) Potri.012G058100 [exp] 51 / 3e-06 AT5G23080 837 / 0.0 TOUGH, SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01805 [flax] [poplar] Surp Surp module CL0020 [flax] [poplar] TPR PF04818 [flax] [poplar] CID CID domain
Representative CDS sequence Show only first row Show all	>Lus10008260 pacid=23154281 polypeptide=Lus10008260 locus=Lus10008260.g ID=Lus10008260.BGIv1.0 annot-version=v1.0 ATGGACAGACCGCCGGGTCACGATTACGCAGCTGCTGCTTCCGCCATGGCGTATGCTCAGCAGCAACAACAACAGCAGCAGCCATTTGGGTTTCATCCGC AGCATCAAAGTCAGCAGTTTCCTCCTCCACAGGCTTTTATGCAGCCGCCGCCTCATCCTTCTATGCAACAGTATCCTTACCCTCATCCCCATTTGCAGCA GCAGCAACAACAGCAACCTCAGCTCCACGGTCATCCCCATCCGCCTCCACACCCTCATCCTCTTCATCATCAGCAGCAGCCTCTCCCTGGTTTCTCTGCT CATTTACCTCCACCGATACTTCCTTCTCCGTTCCATGCCCCTTATGATTCCGCTCCACCACCGGCAGCTCCTCCCCCCTCTGATCCTGAACTCCAGAAGC GAATTCACAAGCTTGTCGAGTACTCCGCGAAGAATGGCCCTGAGTTCGAGCTGATGATCCGAGAAAAGCAGCAGGATAATCCTGCTTATGGTTTTCTTTT TGGGGGTGAAGGTCATAATTATTACCGCTATAAGCTTTGGCTATCTACTCGGCCTCAAGCTGGACCGTACAACGCTCCTTTCCCTCCCTCGTCTGCTGTT CCGTTGATGCATCCTCCTCCAAGTTCTATGATGAATCCTGCTGTGGGGATGCAACCTCCATTTCAACCTTTCTATGATCCACACCAGCATCACCACCAGT CACCTCAACCCTTTGGGGCACACAGAGCAGATTTTGATCCATCTCCCAAGCCCTTCAAAGGTCTTTCTGGTCCACTTCCACCTGAGGTTGCCGTTGAGTT GACCAACGTGCTAAACAGTCTCAATGGCACTAAGGATTCTATTAAAGGGGCTAAACTTTGGTTCATGCAGAGGTCCTCTCCATTTGCACCAGCACTGGCT GAGGCTTTAAGAGATAGGGTATTTTCCCTGGATGACCCAGAGAGACAGCTGCACATCATCTATCTTGCTAATGACATACTTTTTGATAGTTTGCAGCGAA GGGCTAATCCTCATGAGCCTGATAATGAGGCCCTTGCATTCAAGCCAGTCCTGGGTTCCATGCTTTCAAGGATTTTCCAAAACCCACAGAATAAGGAGGA GAACCAATCACGGTTACAGAAAATCCTGCAGTTCTGGGGAGCCAAGGAGGTCTTTCATCAAGATACTATTCATGTACTGGAGAGTGAGATGACTGGCGGA GCACAGACGGGATCGATTTTAGGATCTGCAAGGGACTTATCTGATTCAGTGGCTGCTGGAGGATTCCCACAGCCTCCGACCAACCACAGTGCTTCACACT GGCAGCAGGATAAACAACTTGAGAGGGAGCATGCTGATAAACAAGTCCCAATGGCAATGCCACTGTTGCAACCCCAGCAATTTGTTGCAAGTCCAGTCCC TGCCGGTGGTTTTGCTGGCCATGTACCAGTAATGGCTGCTACTCAACCAGCCAGTCAACATGTACCTCACCTGTTGCAAACTCCCACACCGAGCATCACC GAAAAGTTGCCACCATATCCTTTATTTCCACCAGGTCTCATTCCCGGAATGGTTCGAAAAATGCAGATTGGAAGTGGAGTTCCGTACTCACCTCTGAGTC CTTTGGATATTCCTACAATCATACCACCATCTAACGTATCACCATCAGAGGTTCTTGAAAGAGTGTCAAAGTTCTTTAAAGAGATTGAAGAGGTTAACCC ATCAGAAGGGCCAATGAAAGGATCAGGTCCGCAGGATGAAGATTATGACTACGATTATGAAAGAGAGCGCTCTCCCGTCCGCAAAGGTGGAACGTGTATC CCTCCACCTCCTAACTTGCAAGTCGACCCTGAAACAGGGACTTATGCTGATGGAAGTGTGGAGTGGAAACCAGGATCGGTCGCTTCTGGAAAGCTCGGAC TGGGAGCAACTGCTGACCCTAATGAAGCTAGCCAGTACGATGATGTATACACATCTTACAGGAAAGAAAGAAGCACAAACTACCATACTTCGATGAGTGC AAAAGCAGCCGCAAGGTAA
AA sequence Show only first row Show all	>Lus10008260 pacid=23154281 polypeptide=Lus10008260 locus=Lus10008260.g ID=Lus10008260.BGIv1.0 annot-version=v1.0 MDRPPGHDYAAAASAMAYAQQQQQQQQPFGFHPQHQSQQFPPPQAFMQPPPHPSMQQYPYPHPHLQQQQQQQPQLHGHPHPPPHPHPLHHQQQPLPGFSA HLPPPILPSPFHAPYDSAPPPAAPPPSDPELQKRIHKLVEYSAKNGPEFELMIREKQQDNPAYGFLFGGEGHNYYRYKLWLSTRPQAGPYNAPFPPSSAV PLMHPPPSSMMNPAVGMQPPFQPFYDPHQHHHQSPQPFGAHRADFDPSPKPFKGLSGPLPPEVAVELTNVLNSLNGTKDSIKGAKLWFMQRSSPFAPALA EALRDRVFSLDDPERQLHIIYLANDILFDSLQRRANPHEPDNEALAFKPVLGSMLSRIFQNPQNKEENQSRLQKILQFWGAKEVFHQDTIHVLESEMTGG AQTGSILGSARDLSDSVAAGGFPQPPTNHSASHWQQDKQLEREHADKQVPMAMPLLQPQQFVASPVPAGGFAGHVPVMAATQPASQHVPHLLQTPTPSIT EKLPPYPLFPPGLIPGMVRKMQIGSGVPYSPLSPLDIPTIIPPSNVSPSEVLERVSKFFKEIEEVNPSEGPMKGSGPQDEDYDYDYERERSPVRKGGTCI PPPPNLQVDPETGTYADGSVEWKPGSVASGKLGLGATADPNEASQYDDVYTSYRKERSTNYHTSMSAKAAAR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31200			SWAP (Suppressor-of-White-APri...		Lus10008260 [exp]	0	1
AT1G73980			Phosphoribulokinase / Uridine ...		Lus10009040 [exp]	12.1	0.7016
AT1G08680		ZIGA4, AGD14	ARF-GAP domain 14, ARF GAP-lik...		Lus10005686 [exp]	21.4	0.6501
AT4G16100			Protein of unknown function (D...		Lus10037716 [exp]	39.7	0.6192
AT4G08350		GTA2, GTA02	global transcription factor gr...		Lus10018928 [exp]	41.8	0.6625
AT4G22360			SWIB complex BAF60b domain-con...		Lus10014892 [exp]	57.2	0.6372
AT1G58220	MYB		Homeodomain-like superfamily p...		Lus10028172 [exp]	97.0	0.6139
AT2G25930		PYK20, ELF3	EARLY FLOWERING 3, hydroxyprol...		Lus10005501 [exp]	102.2	0.6131
AT4G34310			alpha/beta-Hydrolases superfam...		Lus10021747 [exp]	138.2	0.5876
AT5G24500			unknown protein		Lus10015567 [exp]	147.3	0.5588
AT5G01160			RING/U-box superfamily protein...		Lus10017185 [exp]	177.7	0.5678

Compare expression of checked genes

Lus10008260 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.