Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72090 71 / 8e-16 Methylthiotransferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016926 [exp] 74 / 5e-17 AT1G72090 787 / 0.0 Methylthiotransferase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G107800 [exp] 91 / 1e-22 AT1G72090 847 / 0.0 Methylthiotransferase (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008261 pacid=23154289 polypeptide=Lus10008261 locus=Lus10008261.g ID=Lus10008261.BGIv1.0 annot-version=v1.0 ATGGAAGACATCGAGGACTTGTTAATAGGCGGTGGCAGCGGAGCTCCTCCCGGGTTCCGGTTACCAATTAACGCTGTTGGAGTAAAGCCCAGGAAGAATG ACAAGAATGGAGCTCAACTCAATGGCAGCTGGCTCTCTGGATCCTCTCTCTTTTCACAAGTTCCTGGAACTCAGACCATATATATAAAGACGTTCGGATG CTCTCATAACCAGGCAAGTTCTTCTGCCTTCTTTTCGTATGCAATCATCTTTTCTGCGCACTAG
AA sequence Show only first row Show all	>Lus10008261 pacid=23154289 polypeptide=Lus10008261 locus=Lus10008261.g ID=Lus10008261.BGIv1.0 annot-version=v1.0 MEDIEDLLIGGGSGAPPGFRLPINAVGVKPRKNDKNGAQLNGSWLSGSSLFSQVPGTQTIYIKTFGCSHNQASSSAFFSYAIIFSAH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72090			Methylthiotransferase (.1)		Lus10008261 [exp]	0	1
AT4G23540			ARM repeat superfamily protein...		Lus10031065 [exp]	13.0	0.8138
AT2G41520		TPR15	tetratricopeptide repeat 15, H...		Lus10035427 [exp]	29.6	0.8072
AT4G01860			Transducin family protein / WD...		Lus10009986 [exp]	43.3	0.7963
AT5G04240	JUMONJI	ELF6	EARLY FLOWERING 6, Zinc finger...		Lus10009218 [exp]	149.7	0.7377
AT1G30960			GTP-binding family protein (.1...		Lus10023046 [exp]	251.9	0.6898
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10016723 [exp]	294.0	0.6871

Compare expression of checked genes

Lus10008261 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.