Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72090 645 / 0 Methylthiotransferase (.1) AT4G36390 75 / 6e-14 Methylthiotransferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016926 [exp] 823 / 0 AT1G72090 787 / 0.0 Methylthiotransferase (.1) Lus10041793 [exp] 85 / 3e-17 AT4G36390 913 / 0.0 Methylthiotransferase (.1) Lus10028344 [exp] 84 / 9e-17 AT4G36390 908 / 0.0 Methylthiotransferase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G107800 [exp] 680 / 0 AT1G72090 847 / 0.0 Methylthiotransferase (.1) Potri.007G018500 [exp] 82 / 2e-16 AT4G36390 864 / 0.0 Methylthiotransferase (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008262 pacid=23154288 polypeptide=Lus10008262 locus=Lus10008262.g ID=Lus10008262.BGIv1.0 annot-version=v1.0 ATGAAGAGAAAAAAGGGGGATGTCTACGATGAAGGATATGGAAGATGCACTGTAAAAGCCCCGAGTCAGTCTGCCATGGACACTCTTATAGAAAAGGGTA AAAGTGCAAAAAAACCCCTTGTTGTAGCTGGTTGTGTACCCCAGGGAAGTCGGAATTTGAAAGAGTTAGATGGAGTCAGTATAGTTGGAGTCCAGCAGAT AGATCGTGTGGTTGAAGTAGTAGAGGAGACCCTAAAGGGGCACGAGGTTCGGCTTCTTACTCGAAAGACATTGCCAGCACTCGATCTCCCAAAGGTCAGA AAAAATAAGTTTGTCGAGATTCTTCCAGTTAATGTTGGCTGTTTGGGAGCCTGCACTTATTGCAAGACAAAGCATGCCCGTGGTCATTTGGGAAGCTATA CCATTGATGGCCTGGTAGGGCGTGTGAAAACAGTTATAGATGAGGGAGTGAAGGAAATATGGTTGAGCAGTGAGGACACTGGAGCATATGGTCGTGACAT CGGAGTTAATCTTCCTACTTTGTTGAATGGCATTGTCGCTGAACTTCCTTCTGACGCAAGCACAATGCTGCGAATTGGGATGACAAATCCGCCCTTTATT CTTGAGCACTTAGAAGAGATTGCAGAAGTTTTGCGTCATCCATGTGTGTACTCGTTTCTTCATGTCCCTGTACAGTCTGGAAGTGATGCTGTTCTGAGTA AAGTTCCTGGGATGCATATTGCTACTGATATCATATGCGGATTTCCTGGTGAAACAGATGAAGATTTTGCTCAAACCGTAAGCCTCATTGACGACTACAA GTTGCCTCAAGTTCATATTTCACAATCTTATCCTCGACCAGGTGGAACTCCGGCGGCCAGAATGAAGAAGGTCCAGAGTAACATAGTGAAGAAGCGGAGT CGTGAGTTGACTGGTGTTTTTGAAGCTTTCACACCATACAATGGAATGGAAGGGAGAATAGAAAGAGTCTGGATAACCGACATCGCTACTGATAGAGTCC ACTTGGTGGGTCACACAAAAGCCTACGTACAAGTACTCATAGTTGCTCCAGAAAGCATGCTTGGAAGTTCAGCTATGGTTAAGATAACATCAGTTGGAAG GTGGTCTGTTTTTGGAGAAGTAATAGAAATAGTTACAGAAGCAGACGACAGAAAATTTAGCAATGAAACAAGGAAAGAAGTGAAGTGTGTTGATGAAGGA GAGAGTTGTGCATGCTCAGGAGAAGAAGCAGCAGCTTGTGCTTGTGGACCGGAGGGTTGCATAGAAGAGAATGGTAACACTGTTTCATGTAATAATAATA ACAATAATGAACCTCTGTTGGTTGGAGGAGGGTTATCGGCGAGGAAACTGAAAGCCAATGGCGCAAGAAAGCTGGTGGGTGAGATGACAAGTGATTTATT AGGAGGCAGCAGCGTTAAGGAAGAAGAAGAAGAAGAGAGGGGTGATTGGGGTTTGGTAGATAGGGTTTTCTTAGGTGGATTGATTGTGAGCTTATTCACA GTGATAGCTCTCCTTACATCTTGGGTTTAG
AA sequence Show only first row Show all	>Lus10008262 pacid=23154288 polypeptide=Lus10008262 locus=Lus10008262.g ID=Lus10008262.BGIv1.0 annot-version=v1.0 MKRKKGDVYDEGYGRCTVKAPSQSAMDTLIEKGKSAKKPLVVAGCVPQGSRNLKELDGVSIVGVQQIDRVVEVVEETLKGHEVRLLTRKTLPALDLPKVR KNKFVEILPVNVGCLGACTYCKTKHARGHLGSYTIDGLVGRVKTVIDEGVKEIWLSSEDTGAYGRDIGVNLPTLLNGIVAELPSDASTMLRIGMTNPPFI LEHLEEIAEVLRHPCVYSFLHVPVQSGSDAVLSKVPGMHIATDIICGFPGETDEDFAQTVSLIDDYKLPQVHISQSYPRPGGTPAARMKKVQSNIVKKRS RELTGVFEAFTPYNGMEGRIERVWITDIATDRVHLVGHTKAYVQVLIVAPESMLGSSAMVKITSVGRWSVFGEVIEIVTEADDRKFSNETRKEVKCVDEG ESCACSGEEAAACACGPEGCIEENGNTVSCNNNNNNEPLLVGGGLSARKLKANGARKLVGEMTSDLLGGSSVKEEEEEERGDWGLVDRVFLGGLIVSLFT VIALLTSWV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72090			Methylthiotransferase (.1)		Lus10008262 [exp]	0	1
AT5G02390		DAU1	DUO1-activated unknown 1, Prot...		Lus10016715 [exp]	6.1	0.8350
AT4G35370			Transducin/WD40 repeat-like su...		Lus10004613 [exp]	8.7	0.7489
AT2G44290			Bifunctional inhibitor/lipid-t...		Lus10017749 [exp]	10.4	0.8076
AT5G58050		GDPDL6, SVL4	Glycerophosphodiester phosphod...		Lus10000055 [exp]	10.4	0.8025
AT2G39550		GGB, ATGGT-IB, ...	GERANYLGERANYLTRANSFERASE-I BE...		Lus10019318 [exp]	12.4	0.7350
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Lus10014175 [exp]	15.3	0.7976
AT1G05180		AXR1	AUXIN RESISTANT 1, NAD(P)-bind...		Lus10031562 [exp]	17.5	0.8024
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10028397 [exp]	18.1	0.7955
AT5G08560			transducin family protein / WD...		Lus10001412 [exp]	18.5	0.7889
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10001010 [exp]	20.0	0.8013

Compare expression of checked genes

Lus10008262 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.