Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09960 302 / 7e-104 MADS AGL11, STK SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) AT3G58780 261 / 2e-87 MADS AGL1, SHP1 SHATTERPROOF 1, AGAMOUS-like 1, K-box region and MADS-box transcription factor family protein (.1.2.3) AT4G18960 259 / 1e-86 MADS AG AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) AT2G42830 258 / 3e-86 MADS AGL5, SHP2 SHATTERPROOF 2, AGAMOUS-like 5, K-box region and MADS-box transcription factor family protein (.1.2) AT4G22950 151 / 9e-45 MADS AGL19 AGAMOUS-like 19 (.1) AT5G62165 144 / 3e-42 MADS FYF, AGL42 FOREVER YOUNG FLOWER, AGAMOUS-like 42 (.1.2.3.4.5) AT2G45660 143 / 6e-42 MADS ATSOC1, SOC1, AGL20 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) AT2G45650 144 / 8e-42 MADS AGL6 AGAMOUS-like 6 (.1) AT3G57230 142 / 5e-41 MADS AGL16 AGAMOUS-like 16 (.1.2) AT4G11880 139 / 5e-40 MADS AGL14 AGAMOUS-like 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005302 [exp] 444 / 2e-159 AT4G09960 330 / 2e-115 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10009481 [exp] 304 / 1e-103 AT4G09960 274 / 1e-92 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10006715 [exp] 141 / 1e-40 AT4G22950 223 / 1e-73 AGAMOUS-like 19 (.1) Lus10004638 [exp] 139 / 4e-40 AT3G02310 246 / 2e-82 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Lus10031665 [exp] 135 / 1e-39 AT5G62165 179 / 8e-58 FOREVER YOUNG FLOWER, AGAMOUS-like 42 (.1.2.3.4.5) Lus10034663 [exp] 139 / 2e-39 AT5G15800 267 / 4e-90 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Lus10015765 [exp] 138 / 3e-39 AT1G24260 347 / 5e-122 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10026678 [exp] 136 / 4e-39 AT5G15800 225 / 3e-74 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Lus10037040 [exp] 136 / 1e-38 AT1G24260 350 / 7e-123 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G104900 [exp] 332 / 7e-116 AT4G09960 330 / 3e-116 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Potri.019G077200 [exp] 273 / 7e-93 AT4G09960 274 / 5e-94 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Potri.004G064300 [exp] 256 / 7e-86 AT4G18960 313 / 8e-109 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) Potri.011G075800 [exp] 256 / 2e-85 AT4G18960 325 / 2e-113 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) Potri.001G112400 [exp] 153 / 1e-45 AT4G22950 253 / 6e-86 AGAMOUS-like 19 (.1) Potri.002G151700 [exp] 147 / 3e-43 AT2G45660 212 / 8e-70 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) Potri.003G119700 [exp] 146 / 4e-43 AT4G11880 226 / 4e-75 AGAMOUS-like 14 (.1) Potri.015G134800 [exp] 145 / 4e-42 AT2G45650 209 / 2e-67 AGAMOUS-like 6 (.1) Potri.012G132600 [exp] 142 / 2e-41 AT2G45650 182 / 3e-57 AGAMOUS-like 6 (.1) Potri.008G098400 [exp] 142 / 3e-41 AT5G15800 275 / 2e-93 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01486 [flax] [poplar] K-box K-box region PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10008264 pacid=23154291 polypeptide=Lus10008264 locus=Lus10008264.g ID=Lus10008264.BGIv1.0 annot-version=v1.0 ATGGATCTCTCCTACTCAATTCCTCAGAAACAGGAACAAGAAGTGACAGAAGATCAAGAGGAGCTCATAGTGAACCACCACAGCAGCAGCAGCGGCATGG GGAGGGGAAAGATCGAAATCAAGAGGATTGAAAACACCACGAACCGACAGGTGACATTCTGCAAGCGAAGGAACGGACTTTTGAAGAAAGCCTATGAGCT CTCCGTGCTCTGTGATGCTGAGGTTGCTCTCATCGTCTTCTCCACCCGTGGCCGCCTCTACGAGTACTCCAACAACAACATCAAGGCCACCATAGAGAAA TACAAGAAGGCATGTTCTGACAGTACCCACACTCCCTCCGTTACTGAAATCAACGCCCAGTATTATCAGCAGGAGTCAGCTAAGCTGAGTCAACAGATCC AAATGCTGCAGAACTCCAACAGGCACCTCATGGGGGAATCTTTGAGCTCACTCTCTATAAAGGAGCTGAAGCAGCTGGAGAACAGACTTGACCGAGGAGT CAGCAGAATCAGGGCCAAGAAGCATGAGCTTCTGCTAGCTGAAATCGAATATATGCAGAAAAGGGAGATTGAGCTGGAGAATGAAAGTGTTTGTCTCCGT ACCAAGATAGCGGAGGTGGAGAGGGTGAATGAGGAAGCGAACATGGTGAGTGGGGCGGAGCTGAATGCAATCCACGCACTGGCTGCGTCTCGCAACTTCT TTGCTCCAAATGAAATGATGGATCATCCTCCTCCGACGTCAGTGACAAACATCCCTTTCTCTCCCGGCAGCAGCAGCCACCAGCAGGAGTCTCCAACTCC GCCGGCGGAGAAGAAGTCACACGTCCACCACCTCCACCTTGCCTGA
AA sequence Show only first row Show all	>Lus10008264 pacid=23154291 polypeptide=Lus10008264 locus=Lus10008264.g ID=Lus10008264.BGIv1.0 annot-version=v1.0 MDLSYSIPQKQEQEVTEDQEELIVNHHSSSSGMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYSNNNIKATIEK YKKACSDSTHTPSVTEINAQYYQQESAKLSQQIQMLQNSNRHLMGESLSSLSIKELKQLENRLDRGVSRIRAKKHELLLAEIEYMQKREIELENESVCLR TKIAEVERVNEEANMVSGAELNAIHALAASRNFFAPNEMMDHPPPTSVTNIPFSPGSSSHQQESPTPPAEKKSHVHHLHLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G09960	MADS	AGL11, STK	SEEDSTICK, AGAMOUS-like 11, K-...		Lus10008264 [exp]	0	1
AT5G59310		LTP4	lipid transfer protein 4 (.1)		Lus10029226 [exp]	1.7	0.9312
AT2G36800		UGT73C5, DOGT1	UDP-GLUCOSYL TRANSFERASE 73C5,...		Lus10022627 [exp]	2.4	0.8925
AT1G15780			unknown protein		Lus10015321 [exp]	3.2	0.9005
AT5G65010		ASN2	asparagine synthetase 2 (.1.2)		Lus10031300 [exp]	6.2	0.8716
AT5G04220		SYT3, NTMCTYPE1...	synaptotagmin 3, Calcium-depen...		Lus10013802 [exp]	12.0	0.8395
AT3G29635			HXXXD-type acyl-transferase fa...		Lus10021388 [exp]	12.4	0.8631
AT3G56570			SET domain-containing protein ...		Lus10013825 [exp]	14.1	0.8430
AT5G42785			unknown protein		Lus10002541 [exp]	14.5	0.8909
AT1G19630		CYP722A1	"cytochrome P450, family 722, ...		Lus10014285 [exp]	18.2	0.8814
AT4G37980		ELI3-1, ATCAD7	CINNAMYL-ALCOHOL DEHYDROGENASE...		Lus10023268 [exp]	20.6	0.8952

Compare expression of checked genes

Lus10008264 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.