Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64670 566 / 0 CED1, BDG1 9-CIS EPOXYCAROTENOID DIOXYGENASE DEFECTIVE 1, BODYGUARD1, alpha/beta-Hydrolases superfamily protein (.1) AT4G24140 560 / 0 BDG3 alpha/beta-Hydrolases superfamily protein (.1) AT5G41900 537 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT5G17780 307 / 4e-100 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G17720 293 / 2e-94 alpha/beta-Hydrolases superfamily protein (.1) AT2G26740 51 / 9e-07 ATSEH soluble epoxide hydrolase (.1) AT4G12830 51 / 1e-06 alpha/beta-Hydrolases superfamily protein (.1) AT5G38520 51 / 1e-06 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G36530 50 / 2e-06 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G26750 49 / 4e-06 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033234 [exp] 868 / 0 AT4G24140 587 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10013629 [exp] 323 / 5e-106 AT5G17780 430 / 8e-149 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10003871 [exp] 312 / 1e-101 AT5G17780 429 / 2e-148 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10036913 [exp] 52 / 4e-07 AT1G13820 466 / 5e-166 alpha/beta-Hydrolases superfamily protein (.1) Lus10038649 [exp] 51 / 1e-06 AT4G15960 420 / 1e-147 alpha/beta-Hydrolases superfamily protein (.1) Lus10037072 [exp] 50 / 1e-06 AT1G13820 367 / 2e-128 alpha/beta-Hydrolases superfamily protein (.1) Lus10028315 [exp] 47 / 2e-05 AT4G36530 538 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10025172 [exp] 46 / 6e-05 AT5G42400 501 / 6e-165 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10012836 [exp] 45 / 7e-05 AT3G47590 359 / 1e-124 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G147400 [exp] 672 / 0 AT4G24140 615 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G083400 [exp] 663 / 0 AT4G24140 619 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G121000 [exp] 56 / 2e-08 AT4G36530 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.005G235200 [exp] 50 / 3e-06 AT4G24160 645 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.002G027300 [exp] 49 / 4e-06 AT4G24160 640 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.019G063900 [exp] 47 / 1e-05 AT5G38520 447 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.004G120000 [exp] 43 / 0.0005 AT5G39220 433 / 9e-153 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10008266 pacid=23173710 polypeptide=Lus10008266 locus=Lus10008266.g ID=Lus10008266.BGIv1.0 annot-version=v1.0 ATGGCGGCAGCTGCATTACACTCCACGGGGAGGTTCATACCCAAAATAAGAATGGCGTTAAAATCCGCGGGGAGATTCATCCACGAGGCGCTCAGCTTCG TTGTGTTTTCATTCCTCGACTTTCTCGATTTCGTCCTCTGTTTCGCTTACAAGATTCTCGATTTCTTAATCGAAGCGGAATGGAAGCCCTGTTACTGCAC CTCGGCCAAAGACGCAATCACTAGCTGCGGTAAGATCTTTGTCTCCGAGCAAGGGGAGTCCAGGATCGTTTCGTTGAGTTCCACAAGGCTGGAGTTGGAA GAGATCTCCGACACTCTCTATTCACGCCCGTCGCTCCTCTCTGAAGTTTCCGAGTTCACGGGGATTAAGAGATCGGGAGTGATTACTACTACCGCGGTGG TCAGATCTAGTTTCACGGTGAACTCCGCCGTCGTCGAAATGCTTCAGGGGAAGAACATCAGCGGTGGCGGTGGAGGTGGAGTCGGAGGAAGAATGCTGAG GTTGCGTACTGATGCTCCCCGGTGGTCTGATTGTGACTGTACAGTGTGCAATAGTTGGACTACTCGTGGGAAAGAGGATCTGTTTGTTAGAGTCCAAGGA CCAAAAGATGGTCAAACGGCGAAGGAGGATGTGTTGTTCATCCATGGTTTCATCTCCTCGTCGTCGTTTTGGACGGAGACGTTGTTCCCAAATTTCTCAG CTGACGGTAAATTGACCTATAGGATGTTTGCGGTGGATCTGCTCGGGTTCGGGAGGAGTCCTAAGCCAACTGACTCACTCTACACACTGAAAGAGCATCT CGAAATGATTGAACGGTCTGTGATCGAACCCTACAAGGTCAAATCATTCCACATTGTCGCTCACTCGCTCGGCTGCATTTTGGCTCTGGCCCTCGCGGTC AAATACCCTGACTCGGTCAAGACGCTCACCCTCCTCGCACCACCCTATTTCCCGATACCGAAAGGGGTTCAAGCGACTCAATACGTGATGAGGAAATTAG CGCCGAGGAGAGTGTGGCCGCCGATCGCATTTGGTGCATCGTTAGCATGTTGGTACGAGCATATTACCCGAACCGTTTGCCTGGTTCTATCCAAGAACCA TCGGCTATGGGAATTTCTCACCAAACTCGTGACAAGAAACAGGATGAAGACGTTTCTGCTAGAAGGGTTCTTTTGCCACACTCACAACGCAGCGTGGCAC ACGCTCCACAACATCATCTGCGGCACCGGAAGCAAGCTTGACGGGTACTTGGACCAAGTCAATGACCGGTTGACCTGTGACGTCAACGTTTTCCACGGCA GCGAGGACGAGCTGATTCCGGTGGAGTGTAGCTACGACGTGCAGCGGAGGGTGCCACGTGCTAAAGTTAAGGTTGTTGAGGATAAAGACCACATTACCAT TATTGTGGGTCGGCAGGAGGCGTTTGCTAGGGAACTGGAGGTGATTTGGAGCAGGGCTTCTTAG
AA sequence Show only first row Show all	>Lus10008266 pacid=23173710 polypeptide=Lus10008266 locus=Lus10008266.g ID=Lus10008266.BGIv1.0 annot-version=v1.0 MAAAALHSTGRFIPKIRMALKSAGRFIHEALSFVVFSFLDFLDFVLCFAYKILDFLIEAEWKPCYCTSAKDAITSCGKIFVSEQGESRIVSLSSTRLELE EISDTLYSRPSLLSEVSEFTGIKRSGVITTTAVVRSSFTVNSAVVEMLQGKNISGGGGGGVGGRMLRLRTDAPRWSDCDCTVCNSWTTRGKEDLFVRVQG PKDGQTAKEDVLFIHGFISSSSFWTETLFPNFSADGKLTYRMFAVDLLGFGRSPKPTDSLYTLKEHLEMIERSVIEPYKVKSFHIVAHSLGCILALALAV KYPDSVKTLTLLAPPYFPIPKGVQATQYVMRKLAPRRVWPPIAFGASLACWYEHITRTVCLVLSKNHRLWEFLTKLVTRNRMKTFLLEGFFCHTHNAAWH TLHNIICGTGSKLDGYLDQVNDRLTCDVNVFHGSEDELIPVECSYDVQRRVPRAKVKVVEDKDHITIIVGRQEAFARELEVIWSRAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24140		BDG3	alpha/beta-Hydrolases superfam...		Lus10008266 [exp]	0	1
					Lus10017791 [exp]	3.0	0.8623
AT4G14480			Protein kinase superfamily pro...		Lus10021882 [exp]	9.8	0.7966
AT5G37550			unknown protein		Lus10020807 [exp]	11.6	0.8004
AT5G23940		PEL3, DCR, EMB3...	PERMEABLE LEAVES3, EMBRYO DEFE...		Lus10039255 [exp]	11.7	0.8199
AT5G47750		PK5, D6PKL2	D6 protein kinase like 2 (.1)		Lus10016629 [exp]	14.4	0.7451
AT3G51760			Protein of unknown function (D...		Lus10022661 [exp]	14.5	0.7603
AT3G47600	MYB	ATMYB94, AtMYBC...	myb domain protein 94 (.1)		Lus10024218 [exp]	15.9	0.7823
					Lus10024490 [exp]	18.4	0.7828
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10015999 [exp]	19.2	0.7963
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10032087 [exp]	20.1	0.7132

Compare expression of checked genes

Lus10008266 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.