Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37740 107 / 6e-25 GRF ATGRF2 growth-regulating factor 2 (.1) AT2G22840 104 / 5e-24 GRF ATGRF1 growth-regulating factor 1 (.1) AT4G24150 94 / 2e-20 GRF ATGRF8 growth-regulating factor 8 (.1) AT5G53660 89 / 2e-19 GRF ATGRF7 growth-regulating factor 7 (.1) AT3G52910 89 / 3e-19 GRF ATGRF4 growth-regulating factor 4 (.1) AT3G13960 89 / 4e-19 GRF ATGRF5 growth-regulating factor 5 (.1) AT2G36400 89 / 6e-19 GRF ATGRF3 growth-regulating factor 3 (.1) AT2G06200 79 / 2e-16 GRF ATGRF6 growth-regulating factor 6 (.1) AT2G45480 59 / 3e-09 GRF ATGRF9 growth-regulating factor 9 (.1) AT4G21430 42 / 0.0008 B160 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033236 [exp] 570 / 0 AT4G24150 151 / 1e-40 growth-regulating factor 8 (.1) Lus10020352 [exp] 100 / 3e-23 AT3G13960 167 / 2e-48 growth-regulating factor 5 (.1) Lus10009533 [exp] 100 / 1e-22 AT3G13960 162 / 7e-45 growth-regulating factor 5 (.1) Lus10011558 [exp] 97 / 2e-21 AT2G22840 268 / 2e-83 growth-regulating factor 1 (.1) Lus10019274 [exp] 96 / 3e-21 AT2G22840 261 / 4e-81 growth-regulating factor 1 (.1) Lus10014380 [exp] 93 / 3e-21 AT2G36400 181 / 5e-55 growth-regulating factor 3 (.1) Lus10011559 [exp] 96 / 4e-21 AT2G22840 290 / 3e-92 growth-regulating factor 1 (.1) Lus10019275 [exp] 95 / 8e-21 AT2G22840 283 / 1e-89 growth-regulating factor 1 (.1) Lus10033441 [exp] 93 / 2e-20 AT3G13960 191 / 3e-56 growth-regulating factor 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G082700 [exp] 157 / 2e-42 AT4G24150 156 / 1e-41 growth-regulating factor 8 (.1) Potri.015G006200 [exp] 103 / 8e-24 AT5G53660 132 / 4e-34 growth-regulating factor 7 (.1) Potri.012G022600 [exp] 100 / 8e-23 AT5G53660 137 / 1e-35 growth-regulating factor 7 (.1) Potri.001G169100 [exp] 98 / 2e-22 AT3G13960 206 / 4e-63 growth-regulating factor 5 (.1) Potri.013G077500 [exp] 97 / 3e-22 AT3G13960 160 / 1e-45 growth-regulating factor 5 (.1) Potri.018G065400 [exp] 96 / 1e-21 AT3G13960 181 / 3e-53 growth-regulating factor 5 (.1) Potri.014G007200 [exp] 96 / 5e-21 AT2G22840 360 / 7e-118 growth-regulating factor 1 (.1) Potri.019G042300 [exp] 93 / 9e-21 AT3G13960 157 / 2e-44 growth-regulating factor 5 (.1) Potri.007G007100 [exp] 94 / 3e-20 AT2G22840 325 / 6e-104 growth-regulating factor 1 (.1) Potri.002G115100 [exp] 94 / 3e-20 AT2G22840 302 / 2e-95 growth-regulating factor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08879 [flax] [poplar] WRC WRC PF08880 [flax] [poplar] QLQ QLQ
Representative CDS sequence Show only first row Show all	>Lus10008268 pacid=23173711 polypeptide=Lus10008268 locus=Lus10008268.g ID=Lus10008268.BGIv1.0 annot-version=v1.0 ATGGTCTCTGCTTCTTCTGATGATGATTGTGGGTTGGCTCTAAAACTGCAAAAGCTTCCATCTTGTAACGATAATATGGCACTCCTGATTCCTCATCATC ATCATGATCATGGCGGTGAGAGTGGGCCCTTGTGTTTCTCCAGGTCAACCAACTCTGTCTCTTCCTCTGTTCCAGAGTTTACTCATATCTATAATGGTGC TCTCCTCCCTCCACCTGCTGCTGATGTTTTTCCACCTGTCTCAAGGTCCAATCATTCATCAGGAGAATCCCCATTTACAGCTGCACAGTGGCAAGAGCTG GAGAGGCAAACCATCATTCTCAAGTACCTCATGGCATCTCTTCCTCTCCCTCCTCACCTAATCCCTAAACCACCTTCCAACATGGGCAGACATTCGTTGG AATTGGGGATATCGACGAGGCAGTCGGATCCGGAACCATGGAGATGCAAAAGAACTGATGGCAAGAAATGGAGGTGCTCCAGGGATGTCGCTCCTGACCA CAAGTACTGCGAGAGGCACACCCGCAAGAGCCGTCCCCGTTCAAGAAAGCCTGTGGAATTTCACTTCGACGATAATACCACCATGAATCATAAGCCTAAT CTCCAAGGCTTAACACCCTCTTCTTATTTTCCCTTCTTTTCCCCTCCTGCTACTGCTGCTGCTAGTGATTCTATACCCTATGAACCACCTAGCAATTTGG AATGGTTCTTGAAGGGTGAGGCAAATGCTGTTCCTTCTGATTATTATTACATGAGAAAAGACGACAAAGATTCCATCTTTGGACTTGATCATCACAGAGA AAAGCAGCCAACTTTTCCCAGTACTCCATTGCATTGCGAGTGGCTTGGTAATGATGATCACTATAACACCTGGTTCTATACTCTTCCCAAGTCAACTACT TCTTCCATGGATGCTGCTACTGCTACTGCTCTGACTCCGGGCGGACTTGCACAAGGACAGGAGACGAGGCACTTCCTAGATGCATGGTCAACCACTAACC ACCGCGAAAAAAACTACATAACCAGATTAGATCGCAAGAAGAGCTCCCCTGTTTCTTCTGCTGACAAAGCAACATTGCCACTTACTTTGTCAATGTGTGG TGGTGATGGTGGTGGTGGTGGGAGTACTGAGACCAGCTATGAAGAAGTAGAGGGAACTAGTTTGAGAACTCAATGGCTGCCTCATGGTTCTTGGCCAATG AGTTCACCGCCTGGCGGACCTTTAGCTGAAGCTTTATGTCTTGGCATCTCCTCCAGCAGTTCGAAATCCCCTCCGAATTTGACTTCCGGCATCAACTCCA GCTTCCCCGACAAATGGTAA
AA sequence Show only first row Show all	>Lus10008268 pacid=23173711 polypeptide=Lus10008268 locus=Lus10008268.g ID=Lus10008268.BGIv1.0 annot-version=v1.0 MVSASSDDDCGLALKLQKLPSCNDNMALLIPHHHHDHGGESGPLCFSRSTNSVSSSVPEFTHIYNGALLPPPAADVFPPVSRSNHSSGESPFTAAQWQEL ERQTIILKYLMASLPLPPHLIPKPPSNMGRHSLELGISTRQSDPEPWRCKRTDGKKWRCSRDVAPDHKYCERHTRKSRPRSRKPVEFHFDDNTTMNHKPN LQGLTPSSYFPFFSPPATAAASDSIPYEPPSNLEWFLKGEANAVPSDYYYMRKDDKDSIFGLDHHREKQPTFPSTPLHCEWLGNDDHYNTWFYTLPKSTT SSMDAATATALTPGGLAQGQETRHFLDAWSTTNHREKNYITRLDRKKSSPVSSADKATLPLTLSMCGGDGGGGGSTETSYEEVEGTSLRTQWLPHGSWPM SSPPGGPLAEALCLGISSSSSKSPPNLTSGINSSFPDKW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24150	GRF	ATGRF8	growth-regulating factor 8 (.1...		Lus10008268 [exp]	0	1
AT4G24150	GRF	ATGRF8	growth-regulating factor 8 (.1...		Lus10033236 [exp]	1.7	0.8700
AT1G08010	GATA	GATA11	GATA transcription factor 11 (...		Lus10041313 [exp]	4.2	0.8620
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Lus10001729 [exp]	6.7	0.9039
AT3G22520			unknown protein		Lus10041202 [exp]	12.2	0.8702
AT1G43190		PTB3	polypyrimidine tract-binding p...		Lus10028566 [exp]	14.4	0.7870
AT3G57070			Glutaredoxin family protein (....		Lus10042021 [exp]	15.2	0.8522
AT5G25590			Protein of unknown function (D...		Lus10038627 [exp]	15.3	0.8351
AT3G50700	C2H2ZnF	ATIDD2	indeterminate(ID)-domain 2 (.1...		Lus10010820 [exp]	16.8	0.7736
AT2G16390		DMS1, CHR35, DR...	DEFECTIVE IN RNA-DIRECTED DNA ...		Lus10042070 [exp]	18.3	0.8003
AT2G45340			Leucine-rich repeat protein ki...		Lus10030279 [exp]	20.0	0.8195

Compare expression of checked genes

Lus10008268 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.