Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01110 218 / 3e-64 IQD18 IQ-domain 18 (.1.2) AT4G00820 192 / 2e-54 IQD17 IQ-domain 17 (.1) AT4G10640 157 / 2e-42 IQD16 IQ-domain 16 (.1) AT3G49380 57 / 1e-08 IQD15 IQ-domain 15 (.1) AT4G14750 57 / 1e-08 IQD19 IQ-domain 19 (.1) AT3G49260 52 / 5e-07 IQD21 IQ-domain 21 (.1.2.3) AT3G22190 49 / 6e-06 IQD5 IQ-domain 5 (.1.2) AT2G26180 48 / 1e-05 IQD6 IQ-domain 6 (.1) AT1G17480 46 / 4e-05 IQD7 IQ-domain 7 (.1) AT1G72670 46 / 4e-05 IQD8 IQ-domain 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033237 [exp] 468 / 2e-163 AT1G01110 183 / 8e-55 IQ-domain 18 (.1.2) Lus10012608 [exp] 194 / 7e-55 AT1G01110 432 / 8e-147 IQ-domain 18 (.1.2) Lus10010104 [exp] 193 / 1e-54 AT1G01110 434 / 3e-147 IQ-domain 18 (.1.2) Lus10021904 [exp] 57 / 2e-08 AT4G14750 314 / 2e-103 IQ-domain 19 (.1) Lus10018115 [exp] 54 / 3e-07 AT3G49260 358 / 8e-120 IQ-domain 21 (.1.2.3) Lus10022399 [exp] 53 / 4e-07 AT3G49260 340 / 2e-112 IQ-domain 21 (.1.2.3) Lus10041188 [exp] 53 / 5e-07 AT4G14750 288 / 2e-93 IQ-domain 19 (.1) Lus10006613 [exp] 52 / 9e-07 AT4G14750 295 / 6e-96 IQ-domain 19 (.1) Lus10014870 [exp] 52 / 1e-06 AT2G26180 249 / 5e-74 IQ-domain 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G448100 [exp] 290 / 2e-91 AT4G00820 288 / 2e-90 IQ-domain 17 (.1) Potri.011G153400 [exp] 280 / 2e-87 AT4G00820 331 / 3e-107 IQ-domain 17 (.1) Potri.002G178500 [exp] 269 / 4e-83 AT4G00820 458 / 1e-156 IQ-domain 17 (.1) Potri.014G104600 [exp] 228 / 8e-68 AT4G00820 432 / 2e-146 IQ-domain 17 (.1) Potri.015G005900 [exp] 201 / 1e-57 AT4G00820 277 / 1e-86 IQ-domain 17 (.1) Potri.012G022500 [exp] 196 / 7e-56 AT1G01110 242 / 2e-73 IQ-domain 18 (.1.2) Potri.015G012500 [exp] 55 / 1e-07 AT3G49260 213 / 9e-64 IQ-domain 21 (.1.2.3) Potri.010G082600 [exp] 55 / 1e-07 AT4G14750 261 / 2e-83 IQ-domain 19 (.1) Potri.008G156700 [exp] 53 / 3e-07 AT4G14750 307 / 6e-101 IQ-domain 19 (.1) Potri.006G226600 [exp] 52 / 8e-07 AT2G26180 386 / 1e-131 IQ-domain 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00612 [flax] [poplar] IQ IQ calmodulin-binding motif
Representative CDS sequence Show only first row Show all	>Lus10008269 pacid=23173725 polypeptide=Lus10008269 locus=Lus10008269.g ID=Lus10008269.BGIv1.0 annot-version=v1.0 ATGGGAACCAAGAGCTGTGAGGTTACCTCTCCTTCTTCTTCATGGTTGACCAAGGTCAAGCGAGCTTTCAGGTCTCCTACCAAGTCCAAGAAGACCCCCA GATGCAGAGACGACCACGGCTTTGACCATCACCACCACCTCGACGAAGAAAAGAAGAGGGAGAAAAGGAGGTGGCTTTTCAGGAAGCCAACTTCCACCGC CACCCAAAATGACCATACTAGCCATGAAGCAGCAGCAACACCACCAACGAATAAGTCGTCAGTAGTCGTAGTAAAAGAGGGATTAAATAGTAAAAAAACA ACACTGCAGGAAGCTGCAACAAGTGCGATGGCAGTTGCGGAAGCTGCAGCCGTCGTCACTGCCCAAGCTGCCGTGGAGATAGCTAGGCTTAACGGTAACG GCAGGCCGTTAAGACAAAAGCAACACTACCGTAGTAGTCATAATTATTACTACGGGGCTGCTGCTCTCGTCATCCAAACGGCTTTCAGGGGCTACTTGGC GAGGAGGGCGCTTCGGGCGCTACGGGGGTTGGTGAAGCTGCAGGCGCTGGTGAGAGGGCATAACGTGAGGAAGCAAGCGAAGCTGACGCTGAGGTGCATG CAAGCTATGGTGAGGGCTCAGCAGCAGCAACACCACCACCGAATCATCGGTGGTGACCAATTGATTAACGGAGGAGGTAGCAGAAGGAGGTCCATGTTTG CTGAGTCAGCTCCCACCGCTTCCTTCTGGGATCCCACCTGTCTCACTGACATTCGCCACCGCAAGTCCAGGTCAAGAGATTTGAGCTCAGTACTAGACGG CTGGGAGGATCATCAGCCACGGAGAAGCGAAGATGTTTCCGATCCACGAAAGGAAGCAGCTTTGAAACGGGAGAAGGCACTCGCTTATGCCTTCTGCAAC CAGATATGGAGGTCTGGGAATGGAAGAAGAAGCCCGTACACACAACCAGAAGAATCAGAATATAAAGAAGAAGAAGAAGAATTCCTGGAGGACAGAGCAA GATGGCTGGACCGTTGGATGGCCACAAAGCAGTCACAGCATCACTCAATTGAGAGGAGGGATTCAATCAAAACATTAGAAATCGACACATCGAGACCGTA CTCTTACAAGCAACAACCCAGTCCTAGGTCCAGCAACCACAACCACCAAACTCCGATCACGCCATCTCCGTCCAGATCGAGACCACTCCAAGTCCGATCC GCTAGCCCGCGATGCTATTCAGCGGCCCACACGCCAAGCTTCGGGGCGAGATCGTCTTCCTCATCGAGGTACGGAGGGATCGGGGCTAATTCTGGAAGTG TACCGAATTACATGGCGGCGACGGAGTCAGCAAAGGCGAGGATTAGATCGCATAGTGCACCCAGGAGCAGGCCGGGTACTCCGGAGCGAGATCAACGTGC GGTTTCAGGTTCAGCTAAGAAGAGGCTGTCATACCCGGTTCCTGACCCTAGTGGGGGATTTACGGGGTATAGTCAGAATTTGAGGACGCCGAGCTTCAAG AGTATGCACAATCTGGGAATGGAGAGAGGATCTACTTATTATGCTAATTCCTGTTATACGGATAGCATTGGTGGGGAGATTTCTCCATGTTCCACCACTG ATCTTAGGTGGCTTAGATAG
AA sequence Show only first row Show all	>Lus10008269 pacid=23173725 polypeptide=Lus10008269 locus=Lus10008269.g ID=Lus10008269.BGIv1.0 annot-version=v1.0 MGTKSCEVTSPSSSWLTKVKRAFRSPTKSKKTPRCRDDHGFDHHHHLDEEKKREKRRWLFRKPTSTATQNDHTSHEAAATPPTNKSSVVVVKEGLNSKKT TLQEAATSAMAVAEAAAVVTAQAAVEIARLNGNGRPLRQKQHYRSSHNYYYGAAALVIQTAFRGYLARRALRALRGLVKLQALVRGHNVRKQAKLTLRCM QAMVRAQQQQHHHRIIGGDQLINGGGSRRRSMFAESAPTASFWDPTCLTDIRHRKSRSRDLSSVLDGWEDHQPRRSEDVSDPRKEAALKREKALAYAFCN QIWRSGNGRRSPYTQPEESEYKEEEEEFLEDRARWLDRWMATKQSQHHSIERRDSIKTLEIDTSRPYSYKQQPSPRSSNHNHQTPITPSPSRSRPLQVRS ASPRCYSAAHTPSFGARSSSSSRYGGIGANSGSVPNYMAATESAKARIRSHSAPRSRPGTPERDQRAVSGSAKKRLSYPVPDPSGGFTGYSQNLRTPSFK SMHNLGMERGSTYYANSCYTDSIGGEISPCSTTDLRWLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01110		IQD18	IQ-domain 18 (.1.2)		Lus10008269 [exp]	0	1
AT2G36400	GRF	ATGRF3	growth-regulating factor 3 (.1...		Lus10023877 [exp]	1.7	0.9448
AT2G22840	GRF	ATGRF1	growth-regulating factor 1 (.1...		Lus10019274 [exp]	3.9	0.9270
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Lus10041735 [exp]	6.3	0.9397
AT4G22860			Cell cycle regulated microtubu...		Lus10006677 [exp]	6.5	0.9392
AT2G22840	GRF	ATGRF1	growth-regulating factor 1 (.1...		Lus10011558 [exp]	6.7	0.9171
AT5G03670			unknown protein		Lus10035565 [exp]	8.4	0.9150
AT2G23530			Zinc-finger domain of monoamin...		Lus10019647 [exp]	8.5	0.9220
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10019248 [exp]	8.9	0.9200
AT2G01630			O-Glycosyl hydrolases family 1...		Lus10013465 [exp]	9.6	0.9308
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Lus10022129 [exp]	9.7	0.8791

Compare expression of checked genes

Lus10008269 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.