Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10630 291 / 4e-97 Glutaredoxin family protein (.1) AT1G32760 228 / 7e-73 Glutaredoxin family protein (.1) AT5G03870 160 / 5e-46 Glutaredoxin family protein (.1) AT5G06470 150 / 2e-43 Glutaredoxin family protein (.1) AT5G39865 147 / 5e-41 Glutaredoxin family protein (.1) AT1G64500 143 / 2e-39 Glutaredoxin family protein (.1) AT3G28850 132 / 6e-35 Glutaredoxin family protein (.1) AT5G01420 128 / 9e-34 Glutaredoxin family protein (.1) AT3G57070 126 / 8e-33 Glutaredoxin family protein (.1) AT5G58530 120 / 1e-31 Glutaredoxin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033238 [exp] 512 / 0 AT4G10630 297 / 1e-99 Glutaredoxin family protein (.1) Lus10017029 [exp] 165 / 3e-47 AT5G03870 296 / 3e-97 Glutaredoxin family protein (.1) Lus10021353 [exp] 162 / 3e-46 AT5G03870 296 / 3e-97 Glutaredoxin family protein (.1) Lus10021255 [exp] 148 / 6e-43 AT5G06470 185 / 7e-59 Glutaredoxin family protein (.1) Lus10013597 [exp] 147 / 7e-43 AT5G06470 179 / 2e-56 Glutaredoxin family protein (.1) Lus10017335 [exp] 143 / 9e-40 AT5G39865 345 / 1e-117 Glutaredoxin family protein (.1) Lus10003194 [exp] 139 / 5e-38 AT1G64500 322 / 3e-108 Glutaredoxin family protein (.1) Lus10028742 [exp] 134 / 2e-36 AT5G01420 221 / 6e-69 Glutaredoxin family protein (.1) Lus10001669 [exp] 133 / 5e-36 AT5G39865 340 / 1e-115 Glutaredoxin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G448300 [exp] 330 / 1e-112 AT4G10630 285 / 6e-95 Glutaredoxin family protein (.1) Potri.006G212700 [exp] 186 / 1e-55 AT5G03870 332 / 2e-111 Glutaredoxin family protein (.1) Potri.016G079400 [exp] 175 / 4e-51 AT5G03870 301 / 2e-99 Glutaredoxin family protein (.1) Potri.010G243700 [exp] 152 / 6e-43 AT5G01420 213 / 3e-65 Glutaredoxin family protein (.1) Potri.006G201300 [exp] 146 / 2e-41 AT5G06470 213 / 1e-68 Glutaredoxin family protein (.1) Potri.008G016100 [exp] 147 / 7e-41 AT5G01420 209 / 2e-63 Glutaredoxin family protein (.1) Potri.016G067700 [exp] 143 / 3e-40 AT5G06470 206 / 4e-66 Glutaredoxin family protein (.1) Potri.003G141800 [exp] 135 / 1e-36 AT1G64500 315 / 8e-106 Glutaredoxin family protein (.1) Potri.017G081600 [exp] 135 / 5e-36 AT3G28850 355 / 3e-119 Glutaredoxin family protein (.1) Potri.006G041800 [exp] 134 / 9e-36 AT3G57070 340 / 3e-114 Glutaredoxin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00462 [flax] [poplar] Glutaredoxin Glutaredoxin
Representative CDS sequence Show only first row Show all	>Lus10008270 pacid=23173699 polypeptide=Lus10008270 locus=Lus10008270.g ID=Lus10008270.BGIv1.0 annot-version=v1.0 ATGGGCTGCGTCTCTTCAAATCTGCTCAACAACGAAGAACACTTCTCCCAGCTGGGCGGTTCCGCTTTAGGAGTCGGCCACCACATCGTCTCCCTCACCT CCACCACTTATGGCCTCCTCAACCTTGACCCGCCTCCGCCTCCGCCGCCACTCTCTCCGACTGCCACCACCACCACCATTGCTCCTACTCCTCCAACTCG ATTCACTCTAGGCTCCGTCTTCCCTTCCTCCCTCTCCGACTCCTCCAATTCCAACCCCAACCGCACACCTCTCTGGTCGCAGCCCAGCCCTTTCCGCTCG GATCGTCCAGAAGTTATCAATTCTTGGGAGCTCATGTCCGGTCTCGATCCAGTCGACAGCTTCCGATTCTCACCCCTCCCTGCTCGAGAAGTGGAGGAGG AGGAGCAGATTAGCAGCACAACTCCTCCTGCGGTCCTCAAAGAAAACTCAAACCCTAATTTCAGTAAGGAAACCCCAAATTTGTCAAATTTGTTAGACGA ATTCGAAATACTCTGCCCTCCGAAAGGGGAGAACAGAGTAGTGATCTACACTACCACATTGAGAGGGATACGGAAGACGTTCGAGGCCTGCAACGCCGTC CGCGCAGCAATGGAATCGTTTGGGATTGCCATCTGTGAGAGGGACATCTCCATGGATCGCGGCTTCAAGGACGAGCTGAGAGAGTTGATGATGAAGATTA GATCTGGTGGCGGGAGTGATGGTGTTCCTGTGGTACCGAGGGTGTTCGTGAAGGGGAGGTACGTGGGAGGGGCTGAGGAGGTGATGAGGATTGTGGAGGA AGGGATGATGGCTGATTTGCTGCAAGGTATTCCGAGGAATAAAGGGAAAGGAGGGAGCTGTGAAGGTTGTGGGAATGCGAGATTCTTGCCGTGTTTTGCC TGTAATGGGAGCTGTAAGATTGTGACTGTGGTGAAGGAGAAGGAATCGGCTGCGAGGAATGCTGTGGTAAGGTGTTCTGATTGTAATGAGAATGGTTTGG TTATGTGCCCGATTTGTAGCTGA
AA sequence Show only first row Show all	>Lus10008270 pacid=23173699 polypeptide=Lus10008270 locus=Lus10008270.g ID=Lus10008270.BGIv1.0 annot-version=v1.0 MGCVSSNLLNNEEHFSQLGGSALGVGHHIVSLTSTTYGLLNLDPPPPPPPLSPTATTTTIAPTPPTRFTLGSVFPSSLSDSSNSNPNRTPLWSQPSPFRS DRPEVINSWELMSGLDPVDSFRFSPLPAREVEEEEQISSTTPPAVLKENSNPNFSKETPNLSNLLDEFEILCPPKGENRVVIYTTTLRGIRKTFEACNAV RAAMESFGIAICERDISMDRGFKDELRELMMKIRSGGGSDGVPVVPRVFVKGRYVGGAEEVMRIVEEGMMADLLQGIPRNKGKGGSCEGCGNARFLPCFA CNGSCKIVTVVKEKESAARNAVVRCSDCNENGLVMCPICS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10630			Glutaredoxin family protein (....		Lus10008270 [exp]	0	1
AT4G10630			Glutaredoxin family protein (....		Lus10033238 [exp]	1.0	0.9748
AT5G58930			Protein of unknown function (D...		Lus10018206 [exp]	1.4	0.9485
AT1G21880		LYM1	lysm domain GPI-anchored prote...		Lus10018191 [exp]	1.7	0.9457
AT5G07590			Transducin/WD40 repeat-like su...		Lus10032495 [exp]	3.2	0.9273
AT1G28290		AGP31	arabinogalactan protein 31 (.1...		Lus10015434 [exp]	3.2	0.9414
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Lus10040712 [exp]	3.5	0.9439
AT1G80660		AHA9	H\(+\)-ATPase 9, H\(+\)-ATPase...		Lus10002326 [exp]	3.7	0.9239
AT3G22680		RDM1	RNA-DIRECTED DNA METHYLATION 1...		Lus10039354 [exp]	4.1	0.9196
AT5G01910			unknown protein		Lus10022734 [exp]	6.5	0.9381
AT2G36400	GRF	ATGRF3	growth-regulating factor 3 (.1...		Lus10023877 [exp]	6.5	0.9390

Compare expression of checked genes

Lus10008270 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.