Lus10008271 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G32770 249 / 1e-82 NAC NST3, ANAC012, SND1 SECONDARY WALL-ASSOCIATED NAC DOMAIN 1, NAC SECONDARY WALL THICKENING PROMOTING 3, NAC domain containing protein 12 (.1)
AT2G46770 241 / 1e-79 NAC NST1, ANAC043, EMB2301 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
AT3G61910 229 / 4e-75 NAC NST2, ANAC066 NAC SECONDARY WALL THICKENING PROMOTING FACTOR2, NAC domain protein 66 (.1)
AT1G79580 217 / 6e-70 NAC ANAC033, SMB, NST6 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3)
AT4G10350 210 / 1e-67 NAC BRN2, NST4, ANAC070 BEARSKIN 2, NAC domain containing protein 70 (.1)
AT1G33280 205 / 4e-66 NAC BRN1, ANAC015, NST5 BEARSKIN 1, NAC domain containing protein 15 (.1)
AT4G36160 201 / 1e-63 NAC ANAC076, VND2 VASCULAR-RELATED NAC-DOMAIN 2, NAC domain containing protein 76 (.1)
AT2G18060 200 / 2e-63 NAC ANAC037, VND1 Arabidopsis NAC domain containing protein 37, vascular related NAC-domain protein 1 (.1)
AT1G12260 197 / 5e-62 NAC ANAC007, VND4, EMB2749 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1)
AT1G62700 197 / 7e-62 NAC ANAC026, VND5 VASCULAR RELATED NAC-DOMAIN PROTEIN 5, Arabidopsis NAC domain containing protein 26 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033239 306 / 3e-104 AT1G32770 318 / 2e-106 SECONDARY WALL-ASSOCIATED NAC DOMAIN 1, NAC SECONDARY WALL THICKENING PROMOTING 3, NAC domain containing protein 12 (.1)
Lus10001664 266 / 1e-88 AT1G32770 343 / 2e-116 SECONDARY WALL-ASSOCIATED NAC DOMAIN 1, NAC SECONDARY WALL THICKENING PROMOTING 3, NAC domain containing protein 12 (.1)
Lus10017340 265 / 1e-88 AT2G46770 347 / 7e-118 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
Lus10002687 244 / 6e-80 AT2G46770 358 / 1e-121 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
Lus10030205 238 / 3e-77 AT2G46770 357 / 5e-121 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
Lus10009939 219 / 3e-72 AT1G79580 314 / 4e-107 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3)
Lus10030143 221 / 6e-72 AT1G79580 279 / 1e-91 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3)
Lus10039153 209 / 2e-66 AT4G10350 327 / 4e-110 BEARSKIN 2, NAC domain containing protein 70 (.1)
Lus10013782 207 / 7e-66 AT4G10350 325 / 5e-110 BEARSKIN 2, NAC domain containing protein 70 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G153300 262 / 6e-87 AT2G46770 297 / 4e-98 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
Potri.001G448400 259 / 4e-86 AT1G32770 295 / 4e-97 SECONDARY WALL-ASSOCIATED NAC DOMAIN 1, NAC SECONDARY WALL THICKENING PROMOTING 3, NAC domain containing protein 12 (.1)
Potri.014G104800 245 / 9e-81 AT2G46770 380 / 3e-131 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
Potri.002G178700 242 / 9e-80 AT2G46770 366 / 1e-125 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
Potri.008G080000 223 / 9e-73 AT1G79580 333 / 2e-113 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3)
Potri.010G176600 222 / 1e-72 AT1G79580 344 / 8e-118 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3)
Potri.013G092400 209 / 3e-67 AT4G10350 436 / 5e-154 BEARSKIN 2, NAC domain containing protein 70 (.1)
Potri.019G066000 207 / 4e-66 AT4G10350 451 / 8e-160 BEARSKIN 2, NAC domain containing protein 70 (.1)
Potri.007G014400 205 / 3e-65 AT2G18060 427 / 1e-149 Arabidopsis NAC domain containing protein 37, vascular related NAC-domain protein 1 (.1)
Potri.001G120000 202 / 2e-64 AT1G12260 455 / 1e-160 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02365 NAM No apical meristem (NAM) protein
Representative CDS sequence
>Lus10008271 pacid=23173696 polypeptide=Lus10008271 locus=Lus10008271.g ID=Lus10008271.BGIv1.0 annot-version=v1.0
ATGGCAGGGGATCATGTGAATCTATCGATAAACGGGCAGTCAAAGGTCCCTCCTGGATTCAGATTCCATCCCACTGAGGAAGAGCTGCTCCATTACTACC
TCCGTAAGAAGGTTGCTTCCGACAAGATCGACCTCGATGTCATCCGCGAGGTCGATCTCAACAAGCTCGAGCCCTGGGACATCCAAGAGAGGTGCAAAAT
AGGGTCGGCTCAGCAGAACGACTGGTACTTCTTCAGCCACAAGGACAAGAAATATCCTACCGGAACCCGGACCAACCGAGCCACCACAGCCGGTTTCTGG
AAGGCGACTGGAAGGGACAAGATCATATACAGCGGGAACAGAAGAAGGATTGGGTTGAGGAAGACTCTTGTTTTCTACCAAGGTCGAGCCCCCCATGGCC
AGAAATCGGACTGGATTATGCACGAGTACCGCCTCGACGATACTGACCACAGCACTAGCTTATTCTCCCCTCTGGCGCGGCAGCAGCTCTTAGTCTACGA
CGACAATGATATCTGGACTAGCTTCACCAAATCGTCGTCTTCTCCGACCTCATCATCAGACCCACTATGCCACTTGTCGGTTTGA
AA sequence
>Lus10008271 pacid=23173696 polypeptide=Lus10008271 locus=Lus10008271.g ID=Lus10008271.BGIv1.0 annot-version=v1.0
MAGDHVNLSINGQSKVPPGFRFHPTEEELLHYYLRKKVASDKIDLDVIREVDLNKLEPWDIQERCKIGSAQQNDWYFFSHKDKKYPTGTRTNRATTAGFW
KATGRDKIIYSGNRRRIGLRKTLVFYQGRAPHGQKSDWIMHEYRLDDTDHSTSLFSPLARQQLLVYDDNDIWTSFTKSSSSPTSSSDPLCHLSV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G32770 NAC NST3, ANAC012, ... SECONDARY WALL-ASSOCIATED NAC ... Lus10008271 0 1
AT1G79620 Leucine-rich repeat protein ki... Lus10023849 1.0 0.9866
AT5G61480 PXY, TDR TDIF receptor, PHLOEM INTERCAL... Lus10015889 2.2 0.9503
AT5G53340 Galactosyltransferase family p... Lus10033935 2.8 0.9664
AT1G43650 nodulin MtN21 /EamA-like trans... Lus10018889 6.2 0.9359
AT1G68200 C3HZnF Zinc finger C-x8-C-x5-C-x3-H t... Lus10035256 7.1 0.9558
AT5G49720 TSD1, IRX2, DEC... TUMOROUS SHOOT DEVELOPMENT 1, ... Lus10007585 7.5 0.9449
Lus10040842 9.2 0.9506
AT1G13180 ATARP3, DIS1 DISTORTED TRICHOMES 1, ARABIDO... Lus10036948 9.7 0.9293
AT1G32770 NAC NST3, ANAC012, ... SECONDARY WALL-ASSOCIATED NAC ... Lus10033239 9.8 0.9434
AT1G22060 unknown protein Lus10037927 11.0 0.9189

Lus10008271 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.