Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20040 405 / 2e-137 Pectin lyase-like superfamily protein (.1) AT4G20050 297 / 2e-95 QRT3 QUARTET 3, Pectin lyase-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033240 [exp] 775 / 0 AT4G20040 449 / 1e-154 Pectin lyase-like superfamily protein (.1) Lus10026120 [exp] 490 / 2e-170 AT4G20040 406 / 6e-138 Pectin lyase-like superfamily protein (.1) Lus10001376 [exp] 483 / 2e-167 AT4G20040 417 / 4e-142 Pectin lyase-like superfamily protein (.1) Lus10038369 [exp] 377 / 4e-126 AT4G20040 439 / 6e-151 Pectin lyase-like superfamily protein (.1) Lus10036230 [exp] 324 / 2e-106 AT4G20040 363 / 4e-122 Pectin lyase-like superfamily protein (.1) Lus10036231 [exp] 290 / 2e-92 AT4G20050 493 / 2e-172 QUARTET 3, Pectin lyase-like superfamily protein (.1.2) Lus10038370 [exp] 214 / 4e-64 AT4G20050 386 / 3e-131 QUARTET 3, Pectin lyase-like superfamily protein (.1.2) Lus10008699 [exp] 64 / 3e-12 ND 48 / 2e-07 Lus10008700 [exp] 52 / 2e-08 AT4G20040 59 / 1e-11 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G075400 [exp] 420 / 4e-144 AT4G20040 530 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G075300 [exp] 404 / 4e-137 AT4G20040 521 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G075500 [exp] 399 / 5e-135 AT4G20040 546 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G159900 [exp] 292 / 3e-93 AT4G20050 604 / 0.0 QUARTET 3, Pectin lyase-like superfamily protein (.1.2) Potri.003G074600 [exp] 289 / 3e-92 AT4G20050 602 / 0.0 QUARTET 3, Pectin lyase-like superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008272 pacid=23173712 polypeptide=Lus10008272 locus=Lus10008272.g ID=Lus10008272.BGIv1.0 annot-version=v1.0 ATGACGTGGATGTCCTTCCTAATTGTATTCACAACACTAATTTTACATTTCCAACAAGCATCATGTTCTGAAGACCACCGCAGGAAACAACAACTAAGAC ACCTGATAGAAGACATAGTTGCGGAAATTGAGCAGATAGCCGCCGTCGCTCGGGGGCCTCCGACTACCGCACGACCGCCGCCCAAGGTCGGAGGAGTATT TTACCCGATCGGGTATGGAGCAGACCCGACAGGTCATGACGACAGCACGGAGGTGATACAACAAGTCTTGAATGACGCATTTCTACAGCTGAGTGATCAG AAGCGGAAATTACTCCCAGGAATCAAGGACTTGGGCGGCCCCGTCATCGATCTCCAGGGTGGCAACTACCTAATCTCCAAACCCATCGTTTTCCCTCCTT CCGGCGGCGGCAACATTTTGATAAAAGAAGGGAGCTTGAGAGCGACAAAGGACTTCCCCGACGACAGGTTCCTAATGGAGCTGATCACCCCAAGATCAGA GGTCCTAATCAACAAAACAGACTCCATACAAAAATTCCAAGGAGTCGGGATCTACTACGAGGACATCACCTTCCGTGACATCCTCTTCGATTCCGGCTTC CACGGCGGAGGCCTTCTGGTGGTGGACGCCGTCAGAACACGCGTCATCAACTCCTACTTCATGAACTTCACATCCCAGGGGATGTCAATCCAAGGCGGCC ACGAGACATTCATCTCCTCTTGCTTCATCGGCCAGAAACCCTCAGTCGGAAGCGACAAGAGCGAGAAAAACTTCTCCGGAGTCGGCATCGACATGGCTAG CAACGACAACGTTATCACCGACACGGTCATATTCTCCTCGGAGATCGGGCTGTTGTTGAGAGGGCAGGCAAATGTAATCACGGGCCTCCACGTGTACAAC AAGGGGACCGAGTTAGGCGGGTCCGGGATTTACGTGAAAGAAGGTGCGGCGTTCACTCGGCTGGATAATTGTTACATGGATTACAACTCTGTTATAATCG AGGACCCGTATTTCACGCACGTGACGAATAGTCTGTTCTTGGGAGACGGGAATGTGGTTGTGAGGTCAGTTTACGGGAGGATTGCGAGCTTGACGATTAC GGATAATTATTTCCACGGGATTAAGCTTCCTATTGTGGAGTTGGACGGGGAGTTCGAGAACGTTGACCAGGTGGTGGTGGAGAATAATCAGGCGAAGTTT ATGGCGGTGAAATCGACGGTGGGGAAGATGACGGTGGGTGGGGAAGGGAAGAGATGGGTGGCGGATTTTAACCAACAGTTGTTGTTTCCTAACAAGATTA ATCATTTTCATTACTCTGTTTTTGTGAAGCCGAAACAAGGCGGAGGAGGAGGTCCGTTTAAGTTTCCGGTTCATGCGGCGACGAACGTTTCGGGGAATGT GGTGGTGGTTGAGAGCGAGGAGGTTGTTGATGCGGTGGTTTCGGTGGTGGTTGATCAGTTTAACCAGATCGGAGAACCCACTGTGGCTCAGTGGCTGGCT GTTGACTAG
AA sequence Show only first row Show all	>Lus10008272 pacid=23173712 polypeptide=Lus10008272 locus=Lus10008272.g ID=Lus10008272.BGIv1.0 annot-version=v1.0 MTWMSFLIVFTTLILHFQQASCSEDHRRKQQLRHLIEDIVAEIEQIAAVARGPPTTARPPPKVGGVFYPIGYGADPTGHDDSTEVIQQVLNDAFLQLSDQ KRKLLPGIKDLGGPVIDLQGGNYLISKPIVFPPSGGGNILIKEGSLRATKDFPDDRFLMELITPRSEVLINKTDSIQKFQGVGIYYEDITFRDILFDSGF HGGGLLVVDAVRTRVINSYFMNFTSQGMSIQGGHETFISSCFIGQKPSVGSDKSEKNFSGVGIDMASNDNVITDTVIFSSEIGLLLRGQANVITGLHVYN KGTELGGSGIYVKEGAAFTRLDNCYMDYNSVIIEDPYFTHVTNSLFLGDGNVVVRSVYGRIASLTITDNYFHGIKLPIVELDGEFENVDQVVVENNQAKF MAVKSTVGKMTVGGEGKRWVADFNQQLLFPNKINHFHYSVFVKPKQGGGGGPFKFPVHAATNVSGNVVVVESEEVVDAVVSVVVDQFNQIGEPTVAQWLA VD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20040			Pectin lyase-like superfamily ...		Lus10008272 [exp]	0	1
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10013728 [exp]	5.4	0.8270
AT2G23600		ATMES2, ACL, AT...	ARABIDOPSIS THALIANA METHYL ES...		Lus10012854 [exp]	7.6	0.8270
AT1G65730		YSL7	YELLOW STRIPE like 7 (.1)		Lus10010205 [exp]	7.9	0.6749
					Lus10026928 [exp]	9.3	0.8270
AT2G46150			Late embryogenesis abundant (L...		Lus10027177 [exp]	10.8	0.8270
AT4G37330		CYP81D4	"cytochrome P450, family 81, s...		Lus10024817 [exp]	12.0	0.8270
AT3G07680			emp24/gp25L/p24 family/GOLD fa...		Lus10006360 [exp]	14.7	0.8149
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Lus10018047 [exp]	17.2	0.8079
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10004633 [exp]	17.5	0.8128
AT2G37010		ATNAP12	non-intrinsic ABC protein 12 (...		Lus10023199 [exp]	18.2	0.7948

Compare expression of checked genes

Lus10008272 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.