Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76250 372 / 9e-127 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012274 [exp] 456 / 1e-159 AT1G76250 483 / 1e-169 unknown protein Lus10016006 [exp] 455 / 2e-159 AT1G76250 483 / 6e-170 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G249600 [exp] 388 / 5e-133 AT1G76250 493 / 2e-173 unknown protein Potri.002G011400 [exp] 381 / 3e-130 AT1G76250 506 / 1e-178 unknown protein Potri.012G136700 [exp] 48 / 1e-06 AT1G76250 66 / 3e-13 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008273 pacid=23173714 polypeptide=Lus10008273 locus=Lus10008273.g ID=Lus10008273.BGIv1.0 annot-version=v1.0 ATGCTACTCGCTAAATTATCGCCGTCCGGCTTCTGTCGGAGGAATCAACCATTGATTTTCCTCATCCTTTTACTCCTCCTAACCTCCTCTCTGCTCATCC CCTGTTTTTTCAACCACTTTGCGTCCTTCTCCTCTGCCTCCGCCGCCCGAGAGTTCGAGCCGTCGTCGAGATCCTTGGCCATGATGATCAATGGGTCGAG GGTGGCCGTGTGTTTGACGGGGGAAGCGAGACTGTTCGAGCTCACGGGACCCTCTATAATTCAAAACGTGCTGAGAGTGATCGCTTCTGTACGGATATTC AAACCGAGTCACATTCCCGAGACCGAGTCCCATCTCCGAGTTCTTTCCGGATCCGACTCCCCCCATGGAGTCCAGGGATTGCTGCAATACTTCAACCTTG TAGAAGGCTGCCTAAATATGATCCAAGACTACCAAACCCGAAACAACTTCACCTACGATTGGATAGTCCGGACCAGAGTCGACTCCTTCTGGTCATCCCC ACTCTCCCCTTCAAACTTCCTCCCTTACTCTCGCTACCTTGTCCCGAACGGATCCTCCTTCGGGGGTCTCAACGACCGCATGGGCATCGGAAATTTCAAA TCCTCACTAACCGCCCTCTCTCGCCTCTCGCTTATTTCTCACCTCGACGAAGAGGGCTACTCAGGGCTCAACTCGGAAGCCGCATTAAAAGGCCAGCTCC AGGTCCACAATGTGAGTTACGACGCAAGCCACGGGGTCCCCTTCTGCATCGTTTCCACCAGGAAATATCATTTCCCACCGAAAAATGGGGAGGTGGTGGT CGCCGCATTGTCAAGTCGTGGGCCCTTAAGTGGGTCAAAATGCAGGCCATGCACCTCGGTCTGCAAAGGTCGTCGGTGCATGGAGAAAGTGATGGGGTCG TTGTACAAGTCGTGGAGTTGGACGGAGTGGAGGAACGGGTCGATGGAGCTGTGCGATGGAAGTGGCGAGTGGGAGTCCGGGTGGGAGAGGGTGTTCGATG AGGTTGTTGGGAAGGAACTTGCTAGGGAGAGAAAGAGAGTTGCAGGGTTGAGCTTGGATGAATGCGTGTGTGATTTTAAGGCAATGATGAATAAAACTGT GGTTTGGGATACGCCTAGTGTGGAGGAGATCTGTCGGACTGGGACTAATCTTGTTTAG
AA sequence Show only first row Show all	>Lus10008273 pacid=23173714 polypeptide=Lus10008273 locus=Lus10008273.g ID=Lus10008273.BGIv1.0 annot-version=v1.0 MLLAKLSPSGFCRRNQPLIFLILLLLLTSSLLIPCFFNHFASFSSASAAREFEPSSRSLAMMINGSRVAVCLTGEARLFELTGPSIIQNVLRVIASVRIF KPSHIPETESHLRVLSGSDSPHGVQGLLQYFNLVEGCLNMIQDYQTRNNFTYDWIVRTRVDSFWSSPLSPSNFLPYSRYLVPNGSSFGGLNDRMGIGNFK SSLTALSRLSLISHLDEEGYSGLNSEAALKGQLQVHNVSYDASHGVPFCIVSTRKYHFPPKNGEVVVAALSSRGPLSGSKCRPCTSVCKGRRCMEKVMGS LYKSWSWTEWRNGSMELCDGSGEWESGWERVFDEVVGKELARERKRVAGLSLDECVCDFKAMMNKTVVWDTPSVEEICRTGTNLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76250			unknown protein		Lus10008273 [exp]	0	1
AT5G26330			Cupredoxin superfamily protein...		Lus10006680 [exp]	5.4	1.0000
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10006721 [exp]	5.7	1.0000
AT2G40070			unknown protein		Lus10008717 [exp]	7.5	1.0000
					Lus10010414 [exp]	8.2	1.0000
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10010628 [exp]	9.2	1.0000
					Lus10010663 [exp]	9.8	1.0000
					Lus10014229 [exp]	11.3	1.0000
AT2G39518			Uncharacterised protein family...		Lus10031304 [exp]	12.0	1.0000
AT4G03230			S-locus lectin protein kinase ...		Lus10031602 [exp]	12.6	1.0000
AT5G64820			unknown protein		Lus10025572 [exp]	14.2	1.0000

Compare expression of checked genes

Lus10008273 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.