Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64700 102 / 2e-26 unknown protein AT3G61920 76 / 1e-16 unknown protein AT5G03890 53 / 1e-08 unknown protein AT1G66480 43 / 7e-05 PMI2 plastid movement impaired 2 (.1) AT5G37840 42 / 0.0002 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001663 [exp] 150 / 1e-44 AT1G64700 138 / 1e-40 unknown protein Lus10017341 [exp] 77 / 2e-17 AT1G64700 56 / 2e-10 unknown protein Lus10023060 [exp] 50 / 4e-07 AT3G61920 73 / 4e-16 unknown protein Lus10002686 [exp] 47 / 9e-07 AT3G61920 57 / 2e-11 unknown protein Lus10032411 [exp] 48 / 1e-06 AT3G61920 73 / 4e-16 unknown protein Lus10030204 [exp] 48 / 2e-06 AT3G61920 59 / 4e-11 unknown protein Lus10036005 [exp] 45 / 2e-05 AT2G01340 174 / 2e-54 unknown protein Lus10016709 [exp] 44 / 4e-05 AT2G01340 147 / 7e-45 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G153000 [exp] 145 / 6e-43 AT1G64700 160 / 1e-49 unknown protein Potri.001G448500 [exp] 139 / 1e-40 AT1G64700 154 / 3e-47 unknown protein Potri.002G178900 [exp] 105 / 7e-28 AT3G61920 142 / 6e-43 unknown protein Potri.014G104900 [exp] 100 / 5e-26 AT3G61920 130 / 4e-38 unknown protein Potri.001G089000 [exp] 59 / 3e-10 AT3G61920 81 / 5e-19 unknown protein Potri.016G079700 [exp] 54 / 4e-09 AT3G10120 114 / 1e-32 unknown protein Potri.006G213100 [exp] 48 / 9e-07 AT3G10120 122 / 9e-36 unknown protein Potri.014G122100 [exp] 45 / 2e-05 AT4G02090 94 / 7e-24 unknown protein Potri.016G128800 [exp] 42 / 7e-05 AT3G03280 52 / 1e-08 unknown protein Potri.006G018200 [exp] 42 / 0.0001 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008274 pacid=23173731 polypeptide=Lus10008274 locus=Lus10008274.g ID=Lus10008274.BGIv1.0 annot-version=v1.0 ATGGGGAACTGCCTCACAGGGGACACTACCTCCGCCGCCGCCGACGAACGACCTTCAATCAGAGTGGTAACCTCAACCGGAGCAATCCTGGAATTCAATT CACCCATAACCGCATGCCGCATCTCCTCCGAATTTCCCGGACACGCTATCTTCCCCTCCCACGACCTTTACTGGACCCCACTCTCACCTCACGACAATCT CCTCCCCGGAGGCACCTACTACCTCCTCCCCATCCCAAACCCTAACTCCTCAATCCGAAGCACCAGCAGAGGACCATCCTATTCCTCTTCGCACCACGCC AGATCGGATAGCTCTCCGACTTCTTCCTGTCCGCTTACGCCTTACCGGACGTCGATTGACTGCAGCAGCAATCAGTACCACCACCGGACGAAGAGGCCGT ACGCGGAGGCGGCGTTTTCGTTGTCCTCGTCTGGAAGCGGCGGGAAGATTGGGAATCGGGAGGAGGCAGGGTTTTGGAAAGTCAAGCTGGTGATTAGTCC CGATCAGCTGATGAAGATTTTGTCTCAGGAGGGATCCACTCACGACTTGGTTCACAATGTTAGCACCGTCGCCAAGTGCGGAGGCTGCTCGAATCTCAGC TCCTCCACCTCCACCTCGTCTTCGTCGTCGGCGTCTTGTTTGTCGGATGAGTGGGTTGCTACTGCGATGTCTACGAGGAGTAGCAGAAATGAATACTCTA GGTCTAGGAGAAATCATCGTCGTGGCTTGCCTGGTTTCTCAGATCCTTCTTAA
AA sequence Show only first row Show all	>Lus10008274 pacid=23173731 polypeptide=Lus10008274 locus=Lus10008274.g ID=Lus10008274.BGIv1.0 annot-version=v1.0 MGNCLTGDTTSAAADERPSIRVVTSTGAILEFNSPITACRISSEFPGHAIFPSHDLYWTPLSPHDNLLPGGTYYLLPIPNPNSSIRSTSRGPSYSSSHHA RSDSSPTSSCPLTPYRTSIDCSSNQYHHRTKRPYAEAAFSLSSSGSGGKIGNREEAGFWKVKLVISPDQLMKILSQEGSTHDLVHNVSTVAKCGGCSNLS SSTSTSSSSSASCLSDEWVATAMSTRSSRNEYSRSRRNHRRGLPGFSDPS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64700			unknown protein		Lus10008274 [exp]	0	1
AT5G38700			unknown protein		Lus10001456 [exp]	1.0	0.9700
AT4G34320			Protein of unknown function (D...		Lus10011295 [exp]	3.0	0.9660
AT1G06450			Polynucleotidyl transferase, r...		Lus10000327 [exp]	3.5	0.9642
AT1G06450			Polynucleotidyl transferase, r...		Lus10035078 [exp]	3.5	0.9674
AT4G34320			Protein of unknown function (D...		Lus10040489 [exp]	4.9	0.9455
AT1G29290			unknown protein		Lus10007309 [exp]	6.5	0.9372
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Lus10034180 [exp]	7.1	0.9521
AT5G47390	MYB		myb-like transcription factor ...		Lus10040181 [exp]	9.8	0.9246
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Lus10016847 [exp]	9.9	0.9325
AT1G70090		GATL9, LGT8	GALACTURONOSYLTRANSFERASE-LIKE...		Lus10010727 [exp]	10.5	0.9249

Compare expression of checked genes

Lus10008274 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.