Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32790 427 / 7e-149 CID11 CTC-interacting domain 11 (.1.2) AT4G10610 407 / 2e-141 ATRBP37, RBP37, CID12 RNA-BINDING PROTEIN 37, CTC-interacting domain 12 (.1.2) AT3G49390 383 / 1e-131 CID10 CTC-interacting domain 10 (.1.2) AT3G14450 361 / 2e-123 CID9 CTC-interacting domain 9 (.1) AT1G53650 334 / 6e-113 CID8 CTC-interacting domain 8 (.1.2) AT5G24440 316 / 7e-106 CID13 CTC-interacting domain 13 (.1) AT2G23350 56 / 3e-08 PABP4, PAB4 poly(A) binding protein 4 (.1) AT3G55340 55 / 7e-08 PHIP1 phragmoplastin interacting protein 1 (.1) AT1G49760 54 / 2e-07 PABP8, PAB8 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) AT4G34110 53 / 3e-07 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033242 [exp] 616 / 0 AT1G32790 436 / 1e-153 CTC-interacting domain 11 (.1.2) Lus10008851 [exp] 404 / 2e-139 AT3G49390 427 / 7e-150 CTC-interacting domain 10 (.1.2) Lus10032942 [exp] 396 / 3e-136 AT3G49390 421 / 2e-147 CTC-interacting domain 10 (.1.2) Lus10032941 [exp] 362 / 2e-123 AT1G32790 383 / 4e-133 CTC-interacting domain 11 (.1.2) Lus10002835 [exp] 66 / 3e-11 AT4G34110 918 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10027886 [exp] 66 / 5e-11 AT4G34110 922 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10034466 [exp] 58 / 9e-09 AT2G16940 569 / 0.0 Splicing factor, CC1-like (.1.2.3) Lus10010042 [exp] 57 / 1e-08 AT4G34110 865 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10003287 [exp] 57 / 2e-08 AT3G55340 291 / 6e-91 phragmoplastin interacting protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G152700 [exp] 426 / 2e-148 AT4G10610 401 / 5e-140 RNA-BINDING PROTEIN 37, CTC-interacting domain 12 (.1.2) Potri.015G005400 [exp] 400 / 6e-138 AT1G32790 415 / 5e-145 CTC-interacting domain 11 (.1.2) Potri.012G022000 [exp] 384 / 2e-131 AT1G32790 428 / 4e-150 CTC-interacting domain 11 (.1.2) Potri.001G448800 [exp] 372 / 2e-127 AT1G32790 363 / 2e-125 CTC-interacting domain 11 (.1.2) Potri.001G377500 [exp] 371 / 2e-127 AT3G14450 424 / 2e-150 CTC-interacting domain 9 (.1) Potri.011G095800 [exp] 366 / 1e-125 AT3G14450 391 / 3e-137 CTC-interacting domain 9 (.1) Potri.010G209701 [exp] 71 / 3e-13 AT3G55340 265 / 2e-82 phragmoplastin interacting protein 1 (.1) Potri.001G304000 [exp] 64 / 1e-10 AT4G34110 837 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.009G099300 [exp] 64 / 1e-10 AT4G34110 850 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.004G177000 [exp] 60 / 2e-09 AT2G16940 538 / 0.0 Splicing factor, CC1-like (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07145 [flax] [poplar] PAM2 Ataxin-2 C-terminal region CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10008275 pacid=23173730 polypeptide=Lus10008275 locus=Lus10008275.g ID=Lus10008275.BGIv1.0 annot-version=v1.0 ATGGGTTTGATGATGAATTATCAGGAAAAAGGACAAAAGGAGTTGGAGCATCGTTCTGGTCGAGGGAGCATGGATGAGGCAAATTGGGGTTCAATTCAAT TCATGCATGATGACTATGTAAGCCGCAGAAGCCGCGGCAGCATGACAGGCGCACGCCGTAAGCTAGCCGGAAGGCTGAGACCGCCAATTTTGACTGGTGA AAAACTACACTATTTTAAGACTACCAATACTATTAACAGCCCCCCCGAGCTGAGGCCTGTGGCCCCCACCGCTGCTGCTGGCGATGCTGAAATCAGTATG GGTTTAACCACTTCTCCCCCGCCGTCTTCCGATCAGGACCGATCTGCCGCCGATCACCAACCTCCGTCGGACACTCTCAACAACAACAACAACGCCACCA ACCCCCGATCCGATCCCGACGGTGATTCCGACGGCGATGCCGCCCGCAGCTACGACAGAAACATGAGGGAATTGCGGGACTTGTTCTCCAAGCTCAACCC AATGGCGGAGGAGTTTGTTCCCCCTTCCTTATCCAACAACGGCGTCGGCCATTACAATAATCACTTGCTCACTGCTGCACTAGCTACTCTCCATGCTTTT GCTCCTGCCTTCTACCCCGAGAACGGTGCCGTTTTCCCACCCGATGCCGTCAAAATTGGCTCCCCTGCTCGAAAGAAGAAAAACTATGGTCAATCAAAGC GTAGGATCAACAGTAGAACAAGCATGGCTCAGCGGGAGGACATAATTCGGAGGACGGTTTATGTTTCTGATATTGATCAACAGGTCACTGAAGAGCAGCT TGCAGCTCTATTTGTTGGCTGTGGGCAGGTTGTTGACTGTCGCATATGTGGTGATCCCAATTCTGTTCTGCGTTTTGCTTTCATTGAGTTCACCGACGAG GATGGCGCACAGGCTGCATTGAATCTGTCAGGAACAATGCTGGGATTTTACCCTGTGAAGGTGCTGCCGTCCAAGACTGCCATAGCACCAGTTAACCCAA CCTTTTTGCCTAGGAATGATGATGAACGGGAAATGTGCACTAGAACCATTTACTGCACAAATATTGACAAGAAGGTGACTCAAGCTGAAATTAAGACCTT TTTCGAATCTGTTTGTGGGGAGGTTTATCGTCTGAGGCTTCTTGGAGACTATCACCACTATACTCGCATTGCTTTTGTGGAGTTTGTGCAGGCTGAAAGT GCAATTGCTGCTCTGAACTGCAGTGGAATGGTTCTGGGATCATTGCCCATAAGGGTTAGCCCGTCGAAGACTCCTGTTAGGCCACGAGCTCCTCGTCTTC CCGGGCAGTGA
AA sequence Show only first row Show all	>Lus10008275 pacid=23173730 polypeptide=Lus10008275 locus=Lus10008275.g ID=Lus10008275.BGIv1.0 annot-version=v1.0 MGLMMNYQEKGQKELEHRSGRGSMDEANWGSIQFMHDDYVSRRSRGSMTGARRKLAGRLRPPILTGEKLHYFKTTNTINSPPELRPVAPTAAAGDAEISM GLTTSPPPSSDQDRSAADHQPPSDTLNNNNNATNPRSDPDGDSDGDAARSYDRNMRELRDLFSKLNPMAEEFVPPSLSNNGVGHYNNHLLTAALATLHAF APAFYPENGAVFPPDAVKIGSPARKKKNYGQSKRRINSRTSMAQREDIIRRTVYVSDIDQQVTEEQLAALFVGCGQVVDCRICGDPNSVLRFAFIEFTDE DGAQAALNLSGTMLGFYPVKVLPSKTAIAPVNPTFLPRNDDEREMCTRTIYCTNIDKKVTQAEIKTFFESVCGEVYRLRLLGDYHHYTRIAFVEFVQAES AIAALNCSGMVLGSLPIRVSPSKTPVRPRAPRLPGQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32790		CID11	CTC-interacting domain 11 (.1....		Lus10008275 [exp]	0	1
AT1G32790		CID11	CTC-interacting domain 11 (.1....		Lus10033242 [exp]	1.0	0.9404
AT2G38970			Zinc finger (C3HC4-type RING f...		Lus10023527 [exp]	1.7	0.8624
AT1G61740			Sulfite exporter TauE/SafE fam...		Lus10020068 [exp]	14.3	0.8582
AT5G54800		ATGPT1, GPT1	ARABIDOPSIS GLUCOSE 6-PHOSPHAT...		Lus10043060 [exp]	20.4	0.8748
AT5G12890			UDP-Glycosyltransferase superf...		Lus10031819 [exp]	24.1	0.8385
AT5G54800		ATGPT1, GPT1	ARABIDOPSIS GLUCOSE 6-PHOSPHAT...		Lus10011155 [exp]	32.9	0.8593
AT2G27080			Late embryogenesis abundant (L...		Lus10026762 [exp]	32.9	0.8167
AT2G40950	bZIP	BZIP17	Basic-leucine zipper (bZIP) tr...		Lus10027290 [exp]	38.2	0.8365
AT4G39230			NmrA-like negative transcripti...		Lus10042313 [exp]	44.3	0.8478
AT4G28640	AUX_IAA	IAA11	indole-3-acetic acid inducible...		Lus10024958 [exp]	50.3	0.8396

Compare expression of checked genes

Lus10008275 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.