Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10570 702 / 0 UBP9 ubiquitin-specific protease 9 (.1) AT4G10590 697 / 0 UBP10 ubiquitin-specific protease 10 (.1.2) AT1G32850 692 / 0 UBP11 ubiquitin-specific protease 11 (.1) AT2G40930 549 / 0 PDE323, ATUBP5, UBP5 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) AT5G22030 405 / 2e-127 UBP8 ubiquitin-specific protease 8 (.1.2) AT1G04860 95 / 1e-19 ATUBP2, UBP2 ubiquitin-specific protease 2 (.1) AT2G32780 88 / 2e-17 ATUBP1 ubiquitin-specific protease 1 (.1) AT4G17895 85 / 1e-16 UBP20 ubiquitin-specific protease 20 (.1) AT5G46740 84 / 3e-16 UBP21 ubiquitin-specific protease 21 (.1) AT2G24640 82 / 4e-16 UBP19 ubiquitin-specific protease 19 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033243 [exp] 1211 / 0 AT4G10570 1028 / 0.0 ubiquitin-specific protease 9 (.1) Lus10017343 [exp] 949 / 0 AT4G10570 1047 / 0.0 ubiquitin-specific protease 9 (.1) Lus10001661 [exp] 923 / 0 AT4G10570 1032 / 0.0 ubiquitin-specific protease 9 (.1) Lus10027289 [exp] 586 / 0 AT2G40930 1239 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Lus10038994 [exp] 547 / 2e-177 AT2G40930 1188 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Lus10013369 [exp] 438 / 1e-139 AT5G22030 1065 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10008452 [exp] 434 / 4e-138 AT5G22030 1028 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10013599 [exp] 427 / 2e-135 AT5G22030 811 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10021253 [exp] 427 / 3e-135 AT5G22030 814 / 0.0 ubiquitin-specific protease 8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G449000 [exp] 837 / 0 AT4G10570 1097 / 0.0 ubiquitin-specific protease 9 (.1) Potri.011G152500 [exp] 837 / 0 AT4G10570 1106 / 0.0 ubiquitin-specific protease 9 (.1) Potri.006G033800 [exp] 580 / 0 AT2G40930 1231 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Potri.016G031900 [exp] 569 / 0 AT2G40930 1204 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Potri.001G214800 [exp] 455 / 1e-146 AT5G22030 1086 / 0.0 ubiquitin-specific protease 8 (.1.2) Potri.006G201100 [exp] 398 / 3e-124 AT5G22030 815 / 0.0 ubiquitin-specific protease 8 (.1.2) Potri.016G067400 [exp] 229 / 3e-67 AT4G10590 239 / 1e-70 ubiquitin-specific protease 10 (.1.2) Potri.017G055600 [exp] 91 / 2e-18 AT1G04860 524 / 1e-170 ubiquitin-specific protease 2 (.1) Potri.018G017000 [exp] 88 / 7e-18 AT5G10790 615 / 0.0 ubiquitin-specific protease 22 (.1) Potri.006G266100 [exp] 88 / 1e-17 AT5G10790 628 / 0.0 ubiquitin-specific protease 22 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00443 [flax] [poplar] UCH Ubiquitin carboxyl-terminal hydrolase CL0125 [flax] [poplar] PF06337 [flax] [poplar] DUSP DUSP domain
Representative CDS sequence Show only first row Show all	>Lus10008276 pacid=23173735 polypeptide=Lus10008276 locus=Lus10008276.g ID=Lus10008276.BGIv1.0 annot-version=v1.0 ATGGATAATCAAGCCAACGGTAGCTTGTCTTCCTCCTCCTCCTCCTCCTCCAGCTATCCCGATCAGGAGAAGCAGATCGTGAAACAATTGACTAATGAAG CTGAGTTGAGTTTGAAGGAAGGCAATTTGTACTTTGTCATCTCCGCTAGGTGGTTCTTCAAATGGGAGAGGTATGTTGGTCAAACTGCCAGCGATTGTTT ATCTGGCTGGCAATCATCTGATTACCTAAATGCTGATGGCTCTACTAGTAAGCATGTTGATAGACCTGGGCCTATCGATAACTCCGACCTAGTTGACGAG GAAAGTCATTCAGAGGGCGGTGAACTTGACCTGGTTAGGACCTTGCTTGAAGGTAAAGACTACGTGTTGGTTCCTCAGCAAGTTTGGGAAAAGCTTCTGC AGTGGTATAAGGGAGGTCCACCATTGCCGAGGAAGATGATTTCACAGGGTACATCTGACAAAAGGCAGCTCAATGTTGAGGTATATCCACTTCGTTTGAA GTTGATTGATTCCAGAGATGATAGTATATCAACAATCAGGTTAAGCAAAAAGGCTACGTCCCAAGAGCTGTATCAGAGGGTGTGCGCACTTAGAGGAGTA GAACAAGAAAAGTACTTGCTCTGGGACTACTTCAATAAACGGAGGCATTCACGTTTGCTATATTCTCGCAATACCCTTGAGGAATTAAACTTGCAGATGG ACCAAGAGATTCTCCTTGAACTACAAGTCAATCTGTCTAATGCTTTCCGATCTGGACGAGATTCAACTGGGAATGAATTAGCTGTGGTACCCCTAGAGCC CCCAAGGACCTGTCAGTCAATTGCTGGGGGCTCAAGTGTCACAAATGGCTACTCAACCTCATGTAGCCACAACACACGGTTGAACGAGGTGAACTCCATC TTTAACGACACCAATGATGATTTTGATTCTCAAAACTCTTCCAGGGAAGGGGAGAAGGGAGGTTTGGCCGGATTGCAGAATTTGGGAAATACTTGCTTTA TGAACAGTGCTTTACAGTGCTTAGTCCATACTCCTCCGCTTGTTGACTACTTCCTGCAAGATTATACGACAGAGATCAACAAAGAAAATCCATTAGGAAT GCATGGTGAGCTTGCAGTTGCATTCGGCGTGTTGTTGAGGAAATTGTGGTCGCCTGGGCAGACTGCAATCGCGCCACGTGCATTTAAAGGGAAACTTGCA CTATTTGCTCCTCAGTTCAGTGGCTATAATCAGCACGATTCCCAAGAGCTTCTTTCCTTTTTACTGGATGGCCTGCATGAAGATCTAAATCGAGTAAAGA GAAAGCCATATATTGAAATGAACGACAGGAGTGGTCATCCTGATGACGAAGTGGCAGCTGAGAGTTGGCAGTATCACAAGGCCCGGAATGATTCTGTGAT TGTTGACGTTTGCCAGGGTCAATACAAGTCTACATTGGTATGCCCAGATTGCAGCAAAGTTTCAGTTACTTTTGATCCACTCATGTACTTGTCATTACCA CTGCCTTCAACAGTCATGCGGTCTATGACTGTGACAGTGTTTTACGGAGACGGAAGTGGTCTTCCAATGCCATACACGGTATCAGTGATGAAAGATGGGC AGTGTAGGGATCTCAACAAGGCGCTGAGTGCCGCATGCTGTTTGAGAACTGATGAAAGTCTTTTGTTGGCAGAAGTATATGAACACAAGATCTATCGTTT CTTTGATAATCCTTCACAGCTGTTGACTTCGATAAAGGATCATGAACATCTTGTGGCCTACCGTTTGCCTGTACATGGGGGAACAAAAAAGAAACTAGAG GTTATTCATCGGGAAAGGTCTTCAGCTGACTTTGTGAACTGTATGGTTGGGATTGAAAATCAGGACTCAACCTACAAGCGTATCTTTAGGGACTCTGTCT TAAAAACTTTCAATCATACGAAAATCTTCTTGGACTGGACGGAAGAAGAACATCGGTTATACGATTCTAGTTATCTGAAGGATCTTCCTGATGTGTATCA TAAGACTGGATTTACTGCAAAGAAAACCCGGTCGGAAGTTGTCTCTTTATTTTCGTGCTTGGATGCATTCTTAAGGGAAGAACCTCTGGGGCCTGATGAC ATGTGGTACTGCCCAAACTGTAAAGAACACCGTCAAGCTACCAAGAAACTAGACTTGTGGATGTTGCCAGAGATTCTTGTCGTTCATATGAAACGGTTCT CGTATAACAGATTCCTGAGGAACAAACTGGTTACTTTTGTGGATTTCCCAATTCATAATCTTGATTTGAGCAAGTACGTCAAGCAAAAAGATAGTGAGAA GTCTTGCACTTACGATCTTTATGCCATCAGCAACCATTATGGTGGTCTTGGCGGGGGACATTACACAGCATATGCAAAGAGCAAAATGAAAGTTCTTTTT TGTCCTGTGATTACTTGTATGGCACGGATTGTTATTTCCCCCCCTTCTTATCGACGAGAACTGTTGCAGCTAATCGACGAGGACAAATGGTATAATTTCG ATGACAGCAGGGTTACTCCTGTCAATGAGTCTGACATCAAGACATCGGCTGCATATGTGCTCTTCTACAGAAGAGTGAAACCTCAAAGGTCGGAGGGACA GGAGATGAAGACATCATAG
AA sequence Show only first row Show all	>Lus10008276 pacid=23173735 polypeptide=Lus10008276 locus=Lus10008276.g ID=Lus10008276.BGIv1.0 annot-version=v1.0 MDNQANGSLSSSSSSSSSYPDQEKQIVKQLTNEAELSLKEGNLYFVISARWFFKWERYVGQTASDCLSGWQSSDYLNADGSTSKHVDRPGPIDNSDLVDE ESHSEGGELDLVRTLLEGKDYVLVPQQVWEKLLQWYKGGPPLPRKMISQGTSDKRQLNVEVYPLRLKLIDSRDDSISTIRLSKKATSQELYQRVCALRGV EQEKYLLWDYFNKRRHSRLLYSRNTLEELNLQMDQEILLELQVNLSNAFRSGRDSTGNELAVVPLEPPRTCQSIAGGSSVTNGYSTSCSHNTRLNEVNSI FNDTNDDFDSQNSSREGEKGGLAGLQNLGNTCFMNSALQCLVHTPPLVDYFLQDYTTEINKENPLGMHGELAVAFGVLLRKLWSPGQTAIAPRAFKGKLA LFAPQFSGYNQHDSQELLSFLLDGLHEDLNRVKRKPYIEMNDRSGHPDDEVAAESWQYHKARNDSVIVDVCQGQYKSTLVCPDCSKVSVTFDPLMYLSLP LPSTVMRSMTVTVFYGDGSGLPMPYTVSVMKDGQCRDLNKALSAACCLRTDESLLLAEVYEHKIYRFFDNPSQLLTSIKDHEHLVAYRLPVHGGTKKKLE VIHRERSSADFVNCMVGIENQDSTYKRIFRDSVLKTFNHTKIFLDWTEEEHRLYDSSYLKDLPDVYHKTGFTAKKTRSEVVSLFSCLDAFLREEPLGPDD MWYCPNCKEHRQATKKLDLWMLPEILVVHMKRFSYNRFLRNKLVTFVDFPIHNLDLSKYVKQKDSEKSCTYDLYAISNHYGGLGGGHYTAYAKSKMKVLF CPVITCMARIVISPPSYRRELLQLIDEDKWYNFDDSRVTPVNESDIKTSAAYVLFYRRVKPQRSEGQEMKTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10570		UBP9	ubiquitin-specific protease 9 ...		Lus10008276 [exp]	0	1
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Lus10037820 [exp]	2.0	0.9054
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Lus10017098 [exp]	2.4	0.9003
AT5G64070		PI-4KBETA1, PI4...	phosphatidylinositol 4-OH kina...		Lus10000272 [exp]	3.5	0.8769
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Lus10028917 [exp]	3.7	0.8237
AT4G02480			AAA-type ATPase family protein...		Lus10010282 [exp]	3.9	0.8827
AT4G02480			AAA-type ATPase family protein...		Lus10036347 [exp]	4.5	0.8750
AT2G15900			Phox-associated domain;Phox-li...		Lus10027939 [exp]	4.6	0.8527
AT1G73660			protein tyrosine kinase family...		Lus10009062 [exp]	5.1	0.8263
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10013293 [exp]	6.3	0.8513
AT3G05090		LRS1	LATERAL ROOT STIMULATOR 1, Tra...		Lus10004142 [exp]	7.3	0.8628

Compare expression of checked genes

Lus10008276 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.