Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32860 478 / 2e-168 Glycosyl hydrolase superfamily protein (.1) AT5G42100 448 / 2e-156 ATBG_PPAP, ATBG_PAP ARABIDOPSIS THALIANA BETA-1,3-GLUCANASE_PUTATIVE, beta-1,3-glucanase_putative (.1.2) AT2G27500 410 / 2e-142 Glycosyl hydrolase superfamily protein (.1.2.3) AT1G30080 370 / 5e-126 Glycosyl hydrolase superfamily protein (.1) AT4G18340 364 / 6e-124 Glycosyl hydrolase superfamily protein (.1) AT2G26600 333 / 1e-111 Glycosyl hydrolase superfamily protein (.1.2) AT3G15800 317 / 2e-105 Glycosyl hydrolase superfamily protein (.1) AT2G05790 315 / 1e-103 O-Glycosyl hydrolases family 17 protein (.1) AT5G55180 307 / 1e-100 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G16230 298 / 8e-97 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033244 [exp] 709 / 0 AT1G32860 483 / 5e-170 Glycosyl hydrolase superfamily protein (.1) Lus10001660 [exp] 554 / 0 AT1G32860 462 / 8e-163 Glycosyl hydrolase superfamily protein (.1) Lus10017344 [exp] 543 / 0 AT1G32860 459 / 5e-161 Glycosyl hydrolase superfamily protein (.1) Lus10004869 [exp] 417 / 1e-144 AT2G27500 491 / 5e-174 Glycosyl hydrolase superfamily protein (.1.2.3) Lus10020618 [exp] 417 / 5e-144 AT2G27500 494 / 5e-175 Glycosyl hydrolase superfamily protein (.1.2.3) Lus10028122 [exp] 373 / 2e-127 AT4G18340 513 / 0.0 Glycosyl hydrolase superfamily protein (.1) Lus10038501 [exp] 363 / 3e-124 AT4G18340 484 / 6e-172 Glycosyl hydrolase superfamily protein (.1) Lus10023309 [exp] 360 / 7e-122 AT4G18340 483 / 2e-170 Glycosyl hydrolase superfamily protein (.1) Lus10042825 [exp] 353 / 2e-120 AT4G18340 479 / 1e-170 Glycosyl hydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G152400 [exp] 536 / 0 AT1G32860 502 / 8e-178 Glycosyl hydrolase superfamily protein (.1) Potri.001G449100 [exp] 527 / 0 AT1G32860 483 / 3e-170 Glycosyl hydrolase superfamily protein (.1) Potri.009G163700 [exp] 413 / 2e-143 AT2G27500 499 / 1e-177 Glycosyl hydrolase superfamily protein (.1.2.3) Potri.004G202400 [exp] 412 / 1e-142 AT2G27500 540 / 0.0 Glycosyl hydrolase superfamily protein (.1.2.3) Potri.011G084900 [exp] 385 / 7e-132 AT1G30080 538 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.004G097400 [exp] 383 / 1e-131 AT2G27500 462 / 3e-163 Glycosyl hydrolase superfamily protein (.1.2.3) Potri.004G132700 [exp] 379 / 1e-129 AT1G30080 525 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.003G032600 [exp] 338 / 1e-113 AT3G15800 524 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.001G192200 [exp] 328 / 4e-109 AT3G15800 514 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.006G067500 [exp] 316 / 2e-104 AT2G26600 561 / 0.0 Glycosyl hydrolase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17
Representative CDS sequence Show only first row Show all	>Lus10008277 pacid=23173728 polypeptide=Lus10008277 locus=Lus10008277.g ID=Lus10008277.BGIv1.0 annot-version=v1.0 ATGAACAAGTTCATCACATTCCTCACCCACTCTGCTCCTCTTCTTCTTCTTCTTCTTCTACTCTTACTTTCAGCTGGACCGGTTGATGCAATCGGGATCA ACTATGGCCAAATCGCCAACAACCTCCCTTCTCCAGAAAACGCAGTCCCATTAATCAAAGCTCTGGGAGCAACTAAAGTCAAGCTCTACGACGCCAGCCC GCCTGTGCTCAAAGCATTCGCACACTCTGGAGTCGAATTCGTCGTCGGCCTCGGCAATGAGTTCCTATCCAAGATGCGAGATCCTGTCAACGCACGCGCC TGGGTCAAATCAAACGTCCAGTCCTACCTCCCAGCCACAAACATCACCTGCATCACCGTCGGCAACGAAGTCTTCACCCTAAACGACACCTCCTACGTCG CCGACCTCCTCCCGGCGATGCAGTCCATCCACTCCGCCGTCCAATCCCTAAACCTCCAGAAGCAGGTCACCGTCACCACTCCTCATTCCATCGCTATCCT CCAGAGCTCGTATCCCCCTTCCGCCGGCGCCTTCAGCAAAGATCTGACTGGATGTTTGACTCAGATCTTGAACTTCCACGCCAAGACCGGATCTCCTTTC CTCATCAACGCTTACCCTTACTTTGCCTACAAGGCGAATCCTAAGCAGGTGCCGCTGGATTTCGTCCTGTTCCAGCCGAATCAAGGAATGGTTGACCCTG GGTCGAAGCTGCACTACGACAACATGCTGTTCGCTCAGATCGACGCCGTGCATTCGGCACTGGCTGCGCTAGGGTTTAAGGATGTCCCCGTTCAGATCTC GGAGACGGGGTGGCCGTCCAAAGGCGACGCTGATGAAGCTGGGGCCACACCGGAGAATGCCAAGAAGTACAACGGAAACCTCATCAAGACTATCTGCCAG CGAAAGGGGACTCCGATGAAGCCCAGCACCGATCTCAACATTTTTGTGTTTGCTTTGTTCAATGAGAACATGAAGCCCGGCCCAACCTCTGAAAGGAATT ATGGGCTTTTGAAGCCCGATGGAACCCCTTCGTACTCAATCGGGATAGACATGCCGGCTGTCAGCAGCGGAGGCGGAAATAAGAGCAGTTCCGCCACCAC CAGCGGTGGCGGAGGAGGAGGGACGAGTCCGAAGTCGGCACCGGGGAGTTCTTCGACAGGGTTTCTGTCGATATCGAGAGCGTCTAGATCATTCCAATGG TGGGGAGGCATGTGGATGCTCGTTGCCGTTCTTGCGTCAGTAGTCTAG
AA sequence Show only first row Show all	>Lus10008277 pacid=23173728 polypeptide=Lus10008277 locus=Lus10008277.g ID=Lus10008277.BGIv1.0 annot-version=v1.0 MNKFITFLTHSAPLLLLLLLLLLSAGPVDAIGINYGQIANNLPSPENAVPLIKALGATKVKLYDASPPVLKAFAHSGVEFVVGLGNEFLSKMRDPVNARA WVKSNVQSYLPATNITCITVGNEVFTLNDTSYVADLLPAMQSIHSAVQSLNLQKQVTVTTPHSIAILQSSYPPSAGAFSKDLTGCLTQILNFHAKTGSPF LINAYPYFAYKANPKQVPLDFVLFQPNQGMVDPGSKLHYDNMLFAQIDAVHSALAALGFKDVPVQISETGWPSKGDADEAGATPENAKKYNGNLIKTICQ RKGTPMKPSTDLNIFVFALFNENMKPGPTSERNYGLLKPDGTPSYSIGIDMPAVSSGGGNKSSSATTSGGGGGGTSPKSAPGSSSTGFLSISRASRSFQW WGGMWMLVAVLASVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32860			Glycosyl hydrolase superfamily...		Lus10008277 [exp]	0	1
AT1G63100	GRAS		GRAS family transcription fact...		Lus10029592 [exp]	6.6	0.9011
AT2G28660			Chloroplast-targeted copper ch...		Lus10040870 [exp]	10.4	0.8815
AT1G64390		ATGH9C2	glycosyl hydrolase 9C2 (.1)		Lus10001833 [exp]	14.7	0.8725
AT1G26840		ORC6, ATORC6	ARABIDOPSIS THALIANA ORIGIN RE...		Lus10036743 [exp]	16.1	0.8837
AT1G63100	GRAS		GRAS family transcription fact...		Lus10006322 [exp]	16.2	0.8879
AT4G32830		ATAUR1	ataurora1 (.1)		Lus10005487 [exp]	16.7	0.8884
AT2G28660			Chloroplast-targeted copper ch...		Lus10005875 [exp]	20.5	0.8657
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Lus10004935 [exp]	23.9	0.8508
AT3G16490		IQD26	IQ-domain 26 (.1)		Lus10043033 [exp]	24.4	0.8860
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Lus10027818 [exp]	26.5	0.8870

Compare expression of checked genes

Lus10008277 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.