Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32900 866 / 0 GBSS1 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1) AT3G01180 339 / 9e-107 ATSS2 starch synthase 2 (.1) AT5G24300 319 / 2e-100 SSI1, SSI, ATSS1 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) AT4G18240 169 / 3e-44 ATSS4, SSIV ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) AT1G11720 158 / 2e-40 ATSS3 starch synthase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033245 [exp] 1125 / 0 AT1G32900 885 / 0.0 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1) Lus10033014 [exp] 343 / 2e-108 AT3G01180 973 / 0.0 starch synthase 2 (.1) Lus10015371 [exp] 327 / 3e-102 AT3G01180 928 / 0.0 starch synthase 2 (.1) Lus10022398 [exp] 322 / 2e-101 AT5G24300 874 / 0.0 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) Lus10018116 [exp] 318 / 6e-100 AT5G24300 855 / 0.0 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) Lus10023319 [exp] 159 / 8e-41 AT4G18240 1303 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Lus10038491 [exp] 159 / 1e-40 AT4G18240 1278 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Lus10042837 [exp] 159 / 1e-40 AT4G18240 1281 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Lus10028133 [exp] 159 / 1e-40 AT4G18240 1285 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G449500 [exp] 871 / 0 AT1G32900 922 / 0.0 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.011G152200 [exp] 858 / 0 AT1G32900 880 / 0.0 granule bound starch synthase 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.017G084100 [exp] 339 / 4e-107 AT3G01180 985 / 0.0 starch synthase 2 (.1) Potri.015G012400 [exp] 310 / 7e-97 AT5G24300 904 / 0.0 STARCH SYNTHASE 1, Glycogen/starch synthases, ADP-glucose type (.1.2) Potri.001G351800 [exp] 164 / 3e-42 AT4G18240 1293 / 0.0 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Potri.004G014100 [exp] 149 / 2e-37 AT1G11720 1460 / 0.0 starch synthase 3 (.1.2) Potri.018G149500 [exp] 123 / 2e-29 AT4G18240 449 / 4e-146 ARABIDOPSIS THALIANA STARCH SYNTHASE 4, starch synthase 4 (.1) Potri.007G009600 [exp] 51 / 3e-06 AT5G65685 507 / 2e-174 UDP-Glycosyltransferase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00534 [flax] [poplar] Glycos_transf_1 Glycosyl transferases group 1 CL0113 [flax] [poplar] GT-B PF08323 [flax] [poplar] Glyco_transf_5 Starch synthase catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10008279 pacid=23173727 polypeptide=Lus10008279 locus=Lus10008279.g ID=Lus10008279.BGIv1.0 annot-version=v1.0 ATGGCGACCATCACGGCTGCGCACTTCGTCTCGAGAGCCACCGTCCATGTCAGCTCTGACGCCAAGCAGGCGGCGGCTGCCGTAGGCCTAATGAGCCACC ACGGTCCAAGGACGGTGAACATGGGCGACAAGCTCCAAATCAGAACCCAACCGAAATCGATTGCATCCACCAGAGCTGGGAAGGTAGTGGCCGCCGCTAC TACTACTGATTCATCTACCACAATCGGAAGCGAAATCGGGATGGATTTGGTGTTTATCTCGGCGGAGTGTGGGCCCTGGAGCAAAACCGGCGGTCTCGGC GACGTCCTTGGTGGACTTCCCCCTGCCATGGCGGCAAGAGGACACAGAGTGATGACAGTGTGCCCACGTTATGACCAGTACAAAGATGCTTGGGACACTG GAGTATTGGTTGAGCTTCCAGTTGGGGATAAACTGGAGACAGTGCGCTTCTTCCATTGTTACAAGAGGGGGGTTGATCGTGTCTTCGTTGATCATCCTTT GTTCCTTGAGAAGGTGTGGGGTAAGACTGGATCCAAGGTTTACGGTCCTACCGCAGGAACTGACTACAAGGATAACCAATTGAGATTCAGTTTGCTTTGC CAAGCTGCGTTGGAGGCACCAAGGGTTCTGAACTTGAACAGCAGCAAGTATTTCTCCGGACCGTATGGAGAGGATGTTCTGTTCATTGCCAATGATTGGC ACACGGCTCTCCTCCCTTGTTACTTGAGAGCCATTTATCAGGCTAACGGCATCTATACGAATGCTAAGGTAGCCTTCTGTATCCACAATATTGCTTATCA AGGAAGATTTGGCTTTTCGGACTTTTCCCTTCTCAATTTGCCAGATTCCTTCAGAAGCTCCTTTGACTTCATGGATGGGTCCGCAAAGCCTGTGAAAGGG AGGAAAATCAACTGGATGAAAGCTGGAATATTGGAATCCGACAGGGTAGTAACTGTGAGTCCGTATTATGCCGAGGAACTAGTCTCTGGAGAAGATAAAG GTGTCGAATTGGATAACATCCTTCGCGTCAAAACAGTTGCTGGCATTGCTAATGGTATGGATGTTCAAGAGTGGAATCCTGCTACCGATAAGTACATTGA TGTCAAATACGATGCAACAACGGTGATGGATGCAAAGCCTTTGTTGAAGGAAACCCTTCAAGCAGAGTGTGGATTGCCTGTTGACAGCAGTATTCCTGTC TTTGGATTCATTGGTAGGTTGGAAGAGCAGAAAGGTTCGGACATTCTTTGTGAAGCTATCCCACAGTTGATTGAACAGGATCTCCAGATTATAATCCTCG GAACAGGAAAGAAGCACATGGAGAAGCAAGTTCAGGAGCTGGAGCAATTGTACCCTGATAAAGTCAGAGGAGTGGCGAAATTCAACGTCCCTTTGGCACA TATGATCACAGCTGGTGCTGACTTCATGTTAGTCCCCAGCAGATTCGAGCCATGCGGTCTTATTCAATTGCACGCTATGCGATATGGAACGGTGCCTTGT GTTGCTTCCACTGGAGGCCTGGTCGACACGGTGAAAGAAGGCTACACAGGATTCCAAATGGGAGCACTCAATGTCAACTGTGAAGCAGTCGACCAGGCTG ATGTAGTCAAGATCATTGCAGCAGTGACAAGGGTTCTTGCCACATTTGGGACGGCTGCACTGAAAGAGATGATCCAGAATGGGATGGCGCAGGATCTGTC GTGGAAGGGACCCGCGAGATTGTGGGAGAAGATGCTGTTGGGATTGGAGGCTGCTGGGAGTGAGGCTGGTATTGAAGGAGATGAGATCGCACCCCTTGCC AAGGAAAATGTCGCGACTCCTTGA
AA sequence Show only first row Show all	>Lus10008279 pacid=23173727 polypeptide=Lus10008279 locus=Lus10008279.g ID=Lus10008279.BGIv1.0 annot-version=v1.0 MATITAAHFVSRATVHVSSDAKQAAAAVGLMSHHGPRTVNMGDKLQIRTQPKSIASTRAGKVVAAATTTDSSTTIGSEIGMDLVFISAECGPWSKTGGLG DVLGGLPPAMAARGHRVMTVCPRYDQYKDAWDTGVLVELPVGDKLETVRFFHCYKRGVDRVFVDHPLFLEKVWGKTGSKVYGPTAGTDYKDNQLRFSLLC QAALEAPRVLNLNSSKYFSGPYGEDVLFIANDWHTALLPCYLRAIYQANGIYTNAKVAFCIHNIAYQGRFGFSDFSLLNLPDSFRSSFDFMDGSAKPVKG RKINWMKAGILESDRVVTVSPYYAEELVSGEDKGVELDNILRVKTVAGIANGMDVQEWNPATDKYIDVKYDATTVMDAKPLLKETLQAECGLPVDSSIPV FGFIGRLEEQKGSDILCEAIPQLIEQDLQIIILGTGKKHMEKQVQELEQLYPDKVRGVAKFNVPLAHMITAGADFMLVPSRFEPCGLIQLHAMRYGTVPC VASTGGLVDTVKEGYTGFQMGALNVNCEAVDQADVVKIIAAVTRVLATFGTAALKEMIQNGMAQDLSWKGPARLWEKMLLGLEAAGSEAGIEGDEIAPLA KENVATP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32900		GBSS1	granule bound starch synthase ...		Lus10008279 [exp]	0	1
AT1G32900		GBSS1	granule bound starch synthase ...		Lus10033245 [exp]	8.9	0.7926
AT2G16890			UDP-Glycosyltransferase superf...		Lus10022220 [exp]	14.1	0.7403
AT3G24503		ALDH1A, REF1, A...	REDUCED EPIDERMAL FLUORESCENCE...		Lus10043245 [exp]	16.1	0.7725
AT5G43100			Eukaryotic aspartyl protease f...		Lus10011513 [exp]	19.1	0.6957
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Lus10039301 [exp]	20.4	0.7921
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10011288 [exp]	23.1	0.7780
AT2G45560		CYP76C1	"cytochrome P450, family 76, s...		Lus10027431 [exp]	24.2	0.7240
AT4G27030		FADA, FAD4	FATTY ACID DESATURASE 4, fatty...		Lus10037808 [exp]	29.0	0.7731
AT1G78510		SPS1	solanesyl diphosphate synthase...		Lus10005570 [exp]	31.1	0.7322
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10015483 [exp]	35.1	0.6937

Compare expression of checked genes

Lus10008279 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.