Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64720 361 / 2e-125 CP5 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT5G54170 282 / 1e-93 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT4G14500 269 / 1e-88 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) AT3G23080 267 / 1e-88 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) AT3G13062 108 / 3e-27 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2.3) AT1G55960 103 / 2e-25 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033247 [exp] 448 / 2e-159 AT1G64720 523 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10032938 [exp] 299 / 3e-100 AT1G64720 437 / 2e-152 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10041166 [exp] 265 / 1e-86 AT4G14500 607 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Lus10021883 [exp] 255 / 5e-83 AT4G14500 605 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Lus10033334 [exp] 91 / 8e-21 AT1G55960 384 / 5e-132 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10015566 [exp] 86 / 2e-20 AT1G64720 105 / 5e-27 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10000083 [exp] 73 / 2e-15 AT3G23080 122 / 6e-33 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Lus10034791 [exp] 75 / 3e-15 AT3G13062 346 / 2e-115 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G450100 [exp] 382 / 3e-133 AT1G64720 489 / 6e-173 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.011G151500 [exp] 377 / 6e-131 AT1G64720 515 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.012G021400 [exp] 350 / 3e-120 AT1G64720 478 / 2e-168 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.015G005000 [exp] 347 / 6e-119 AT1G64720 474 / 1e-166 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.008G162600 [exp] 267 / 8e-88 AT4G14500 581 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Potri.010G076500 [exp] 267 / 9e-88 AT4G14500 571 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Potri.007G002700 [exp] 100 / 2e-24 AT3G13062 390 / 5e-134 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2.3) Potri.014G001100 [exp] 99 / 9e-24 AT3G13062 416 / 3e-144 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008281 pacid=23173704 polypeptide=Lus10008281 locus=Lus10008281.g ID=Lus10008281.BGIv1.0 annot-version=v1.0 ATGGTGAGGGACTTCTTCTGGGATGATGAGTTTCGAGCTAAGTGGGATGACATGCTTTTACATTCTGAAACTCTTGAGAAGTGTCCTACCACAGGAACCA TGATGGTTCAGTGGGTTCGCAAGTTTCCTTTCTTCTGTAGCGACAGAGAGTACATCATTGGCCGCCGGATTTGGGAATCTGACAGAACATACTACTGTGT CACCAAGGGAGTTCCATGTACTTCTGTTCCAAGGCGCAACAAGCCACGCCGTGTTGATCTCTACTATTCAAGCTGGTGCATTCGTGCAGCTGAATCAAAG AGAGGAAATGGTCAGATGACTGCCTGTGAGGTGTTACTTTTCCATTACGAGGACATGGGCATCCCATGGGAGATTGCGAAACTCGGAGTGCGACAGGGAA TGTGGGGAGCTGTCAAGAAAATCGAGCCAGGTCTACGAGCGTATCAGAAAGAAAGAGCGTCCGGAGCCCCACTTTCTCCTTGCGGTGCCATGGCTCAAAT CAACACCAAAGTGACTCCAGACTACCTGGAGTCTCTAGATAGCAGCAGCAGTAGCAGCCGCATCACTAGTGATTCAACCGAGATTGAAACCACAGGTTCG ACGGACAAAGCACAGAAGGGTTGCATACCAAGGATTCTAGTAGTTGGCGGAGCTATTGCTCTAGCGTGTACCCTTGATAAGGGACTCCTTACAAAGGCAG TCATATTTGGAGTAGGTAGAAGGTTTGCCAAGATTGGGAGCAGATTCTGA
AA sequence Show only first row Show all	>Lus10008281 pacid=23173704 polypeptide=Lus10008281 locus=Lus10008281.g ID=Lus10008281.BGIv1.0 annot-version=v1.0 MVRDFFWDDEFRAKWDDMLLHSETLEKCPTTGTMMVQWVRKFPFFCSDREYIIGRRIWESDRTYYCVTKGVPCTSVPRRNKPRRVDLYYSSWCIRAAESK RGNGQMTACEVLLFHYEDMGIPWEIAKLGVRQGMWGAVKKIEPGLRAYQKERASGAPLSPCGAMAQINTKVTPDYLESLDSSSSSSRITSDSTEIETTGS TDKAQKGCIPRILVVGGAIALACTLDKGLLTKAVIFGVGRRFAKIGSRF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64720		CP5	Polyketide cyclase/dehydrase a...		Lus10008281 [exp]	0	1
AT1G76080		ATCDSP32, CDSP3...	ARABIDOPSIS THALIANA CHLOROPLA...		Lus10005624 [exp]	1.7	0.8648
AT1G64720		CP5	Polyketide cyclase/dehydrase a...		Lus10033247 [exp]	4.0	0.8255
AT3G23080			Polyketide cyclase/dehydrase a...		Lus10000083 [exp]	4.9	0.8438
AT4G23890		NdhS, CRR31	NADH dehydrogenase-like comple...		Lus10003880 [exp]	5.2	0.8235
AT2G30570		PSBW	photosystem II reaction center...		Lus10018771 [exp]	11.9	0.8516
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10004708 [exp]	16.3	0.8409
AT4G10810			unknown protein		Lus10012620 [exp]	16.3	0.7235
AT4G21860		MSRB2	methionine sulfoxide reductase...		Lus10007105 [exp]	23.1	0.7691
AT2G30570		PSBW	photosystem II reaction center...		Lus10024858 [exp]	26.5	0.8448
AT1G58290		AtHEMA1, HEMA1	Arabidopsis thaliana hemA 1, G...		Lus10042931 [exp]	27.2	0.8208

Compare expression of checked genes

Lus10008281 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.