Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32930 617 / 0 Galactosyltransferase family protein (.1) AT1G05170 521 / 0 Galactosyltransferase family protein (.1.2) AT1G77810 506 / 4e-180 Galactosyltransferase family protein (.1.2) AT2G32430 496 / 5e-176 Galactosyltransferase family protein (.1) AT4G26940 484 / 4e-171 Galactosyltransferase family protein (.1.2) AT1G33430 481 / 3e-170 Galactosyltransferase family protein (.1.2) AT1G11730 456 / 3e-160 Galactosyltransferase family protein (.1) AT1G22015 444 / 2e-155 DD46 Galactosyltransferase family protein (.1) AT5G53340 251 / 8e-81 Galactosyltransferase family protein (.1.2) AT4G32120 219 / 4e-68 Galactosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033248 [exp] 816 / 0 AT1G32930 618 / 0.0 Galactosyltransferase family protein (.1) Lus10024750 [exp] 526 / 0 AT1G77810 599 / 0.0 Galactosyltransferase family protein (.1.2) Lus10006933 [exp] 525 / 0 AT1G77810 602 / 0.0 Galactosyltransferase family protein (.1.2) Lus10040062 [exp] 514 / 0 AT1G05170 647 / 0.0 Galactosyltransferase family protein (.1.2) Lus10021538 [exp] 484 / 2e-171 AT1G05170 610 / 0.0 Galactosyltransferase family protein (.1.2) Lus10027185 [exp] 479 / 1e-168 AT1G05170 624 / 0.0 Galactosyltransferase family protein (.1.2) Lus10031567 [exp] 472 / 3e-166 AT1G05170 633 / 0.0 Galactosyltransferase family protein (.1.2) Lus10015107 [exp] 469 / 4e-165 AT1G05170 639 / 0.0 Galactosyltransferase family protein (.1.2) Lus10039657 [exp] 463 / 2e-162 AT1G05170 607 / 0.0 Galactosyltransferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G450200 [exp] 701 / 0 AT1G32930 625 / 0.0 Galactosyltransferase family protein (.1) Potri.011G151400 [exp] 661 / 0 AT1G32930 615 / 0.0 Galactosyltransferase family protein (.1) Potri.014G153700 [exp] 529 / 0 AT1G05170 699 / 0.0 Galactosyltransferase family protein (.1.2) Potri.002G228900 [exp] 511 / 0 AT1G05170 673 / 0.0 Galactosyltransferase family protein (.1.2) Potri.002G089800 [exp] 510 / 0 AT1G77810 611 / 0.0 Galactosyltransferase family protein (.1.2) Potri.005G171400 [exp] 503 / 1e-178 AT1G77810 594 / 0.0 Galactosyltransferase family protein (.1.2) Potri.004G013900 [exp] 484 / 3e-171 AT1G05170 547 / 0.0 Galactosyltransferase family protein (.1.2) Potri.019G067300 [exp] 483 / 3e-170 AT1G33430 560 / 0.0 Galactosyltransferase family protein (.1.2) Potri.011G004200 [exp] 479 / 2e-169 AT1G05170 520 / 0.0 Galactosyltransferase family protein (.1.2) Potri.003G136000 [exp] 263 / 5e-85 AT5G53340 484 / 3e-173 Galactosyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01762 [flax] [poplar] Galactosyl_T Galactosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10008282 pacid=23173702 polypeptide=Lus10008282 locus=Lus10008282.g ID=Lus10008282.BGIv1.0 annot-version=v1.0 ATGGCGTCCGGCAGCAGGCCTCTAAGACCCACTAACGGTGTTTCCACCAAATGGCTCGCCATCTTCTGCATTGCCAGCTTCTTCTTGGGCTACCTTGTTG TTAACAGGTTCTGGCCTTTTCCTGATTCAGCCAAAGTAGATGAAAGAAGTTCATCCATGGAGCTTAAGTCCAAGTTACTCCATCCCACCGTTAACTGTGA AAAGAAGGAGACTACAGACATTCTTTCTCAAGTTTCTCAAACCCATGATATGATCATGAACTTAGACAAAACAATCTCCACTCTGGAGATGCAGCTGGCT GCTGCAAGAGCTTCTAAAGCTTCTAACGAAGAAGAACTTCTCGTCGTGACAAAACCAGGAACTGAGCATTTGAAGAATCGGCCAAAGGTTTTCTTTGTCA TGGGTATAATGACTGCATTTAGCAGCAGAAAGAGAAGAGACTCAATTAGAGATACATGGATGCCCAAAGGTCAGGATTTAAAGAGGTTGGAAACCGAGAA GGGTATAATCATGCGGTTTGTCATTGGACACAGTGCATCTTCAGGTGGGATTCTGGATCGAGCTATAGTTGCTGAAGAAGACCAGTACAAGGATTTTCTA CGGCTGAATCACATAGAAGGTTATCATGAACTGTCATCGAAAACGCAAATATACTTCTCAACTGCTGTTGTCAAATGGGATGCCGACTTCTACATAAAAG TTGACGACGATGTACACATTAACCTCGGTATGGTTGGGTCCACATTGGCACGTCACAGATCGAAACCCCGTGTGTACATAGGTTGCATGAAATCTGGACC AGTCCTAGCTCAGAAAGGGGTAAAGTACCATGAACCAGAGTACTGGAAGTTTGGGGAGGAAGGGAATAAGTACTTCAGGCATGCAACAGGACAGATATAC GCTGTTTCGAAAGATCTGGCCACCTACATTTCTGTAAACCGGCATATACTTCATAGATATGCAAACGAAGATGTATCACTGGGGTCATGGTTTATGGGAC TAGACGTGGAACATGTCGATGATCGAAGCCTCTGCTGCGGTTCACCTCCCGATTGCGAGTGGAAGGCGGATGCAGGTAATGCTTGCGCTGCGTCGTTTGA TTGGTCGTGCAGCGGGATATGCAAATCGGCAGAGAGAATGGGAGAAGTGCACCAGCGTTGTGGAGAAGGTGATGGAGCAATCTGGCACACCAGTTTCTAG
AA sequence Show only first row Show all	>Lus10008282 pacid=23173702 polypeptide=Lus10008282 locus=Lus10008282.g ID=Lus10008282.BGIv1.0 annot-version=v1.0 MASGSRPLRPTNGVSTKWLAIFCIASFFLGYLVVNRFWPFPDSAKVDERSSSMELKSKLLHPTVNCEKKETTDILSQVSQTHDMIMNLDKTISTLEMQLA AARASKASNEEELLVVTKPGTEHLKNRPKVFFVMGIMTAFSSRKRRDSIRDTWMPKGQDLKRLETEKGIIMRFVIGHSASSGGILDRAIVAEEDQYKDFL RLNHIEGYHELSSKTQIYFSTAVVKWDADFYIKVDDDVHINLGMVGSTLARHRSKPRVYIGCMKSGPVLAQKGVKYHEPEYWKFGEEGNKYFRHATGQIY AVSKDLATYISVNRHILHRYANEDVSLGSWFMGLDVEHVDDRSLCCGSPPDCEWKADAGNACAASFDWSCSGICKSAERMGEVHQRCGEGDGAIWHTSF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32930			Galactosyltransferase family p...		Lus10008282 [exp]	0	1
AT5G58610			PHD finger transcription facto...		Lus10015266 [exp]	1.7	0.8728
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10015055 [exp]	1.7	0.8754
AT3G17900			unknown protein		Lus10013273 [exp]	3.5	0.8525
AT2G36390		SBE2.1, BE3	BRANCHING ENZYME 3, starch bra...		Lus10016012 [exp]	4.7	0.8380
AT1G32930			Galactosyltransferase family p...		Lus10033248 [exp]	6.0	0.8267
AT1G38065			O-fucosyltransferase family pr...		Lus10028080 [exp]	6.0	0.8656
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Lus10028358 [exp]	7.5	0.8124
AT5G05240			Uncharacterised conserved prot...		Lus10029030 [exp]	8.1	0.8739
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10042785 [exp]	9.5	0.8199
AT3G07960		PIP5K6	phosphatidylinositol-4-phospha...		Lus10008651 [exp]	10.0	0.7627

Compare expression of checked genes

Lus10008282 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.