Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61460 74 / 5e-17 BRH1 brassinosteroid-responsive RING-H2 (.1) AT3G43430 68 / 2e-14 RING/U-box superfamily protein (.1) AT5G41400 66 / 7e-14 RING/U-box superfamily protein (.1) AT1G63840 64 / 4e-13 RING/U-box superfamily protein (.1) AT2G35420 64 / 2e-12 RING/U-box superfamily protein (.1) AT4G11360 62 / 2e-12 RHA1B RING-H2 finger A1B (.1) AT4G00305 61 / 3e-12 RING/U-box superfamily protein (.1) AT4G11370 60 / 1e-11 RHA1A RING-H2 finger A1A (.1) AT4G10150 61 / 3e-11 RING/U-box superfamily protein (.1) AT2G01150 59 / 4e-11 RHA2B RING-H2 finger protein 2B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036378 [exp] 78 / 6e-18 AT3G61460 210 / 5e-70 brassinosteroid-responsive RING-H2 (.1) Lus10017510 [exp] 71 / 1e-15 AT3G61460 176 / 6e-57 brassinosteroid-responsive RING-H2 (.1) Lus10032290 [exp] 71 / 1e-15 AT3G61460 200 / 2e-66 brassinosteroid-responsive RING-H2 (.1) Lus10024657 [exp] 71 / 2e-15 AT3G61460 200 / 4e-66 brassinosteroid-responsive RING-H2 (.1) Lus10028773 [exp] 70 / 4e-15 AT3G61460 169 / 4e-54 brassinosteroid-responsive RING-H2 (.1) Lus10043353 [exp] 59 / 5e-11 AT5G20885 157 / 4e-49 RING/U-box superfamily protein (.1) Lus10019150 [exp] 57 / 1e-10 AT2G04240 62 / 6e-13 RING/U-box superfamily protein (.1.2) Lus10034407 [exp] 57 / 2e-10 AT2G04240 61 / 2e-12 RING/U-box superfamily protein (.1.2) Lus10019507 [exp] 55 / 1e-09 AT5G20885 162 / 5e-51 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G450700 [exp] 108 / 3e-30 AT3G61460 71 / 2e-15 brassinosteroid-responsive RING-H2 (.1) Potri.011G150800 [exp] 104 / 3e-28 AT3G61460 69 / 1e-14 brassinosteroid-responsive RING-H2 (.1) Potri.014G087700 [exp] 77 / 4e-18 AT3G61460 220 / 2e-74 brassinosteroid-responsive RING-H2 (.1) Potri.002G161900 [exp] 76 / 2e-17 AT3G61460 234 / 7e-80 brassinosteroid-responsive RING-H2 (.1) Potri.003G130900 [exp] 69 / 7e-15 AT1G63840 197 / 4e-65 RING/U-box superfamily protein (.1) Potri.001G101000 [exp] 67 / 5e-14 AT3G61460 171 / 9e-55 brassinosteroid-responsive RING-H2 (.1) Potri.007G086300 [exp] 65 / 2e-13 AT1G15100 79 / 5e-19 RING-H2 finger A2A (.1) Potri.006G217000 [exp] 65 / 2e-13 AT5G20885 138 / 8e-42 RING/U-box superfamily protein (.1) Potri.010G047100 [exp] 62 / 1e-12 AT1G67856 133 / 4e-41 RING/U-box superfamily protein (.1) Potri.003G073300 [exp] 64 / 2e-12 AT1G53820 157 / 2e-46 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10008283 pacid=23173721 polypeptide=Lus10008283 locus=Lus10008283.g ID=Lus10008283.BGIv1.0 annot-version=v1.0 ATGAAATTCCGATGCGACTTCGTTTCGGCAAAGATCCCCAACTGGGTGGACTCGGCGTTGAGCTGCATAAGGTGGATACTAGTGGAAGCGCTTTCCCTGG TCGGTCTGATGAAGTCGCCGGCGGCGTCAGAGTACTCACCGGAAGAGAGCAGCAGCGACACTACCCACTTTCTGCTACTCGACGGATTCTATCTGATGTC GGTCCCGGTCAGTGACCTCACCAGGTTCATCAAGAGGAGCCTCCCCGTCATCAGTTATTCTTCATTTCTGATCCCTGACGGCGGGGAGGAGACGGCGGCG GCGGGGATGTGCACGGTGTGCATGGAGGCGATAAGTGGAGAAGAGAAGATAAGAGAGCTATGTAACTGCCGCCACGTGTTCCACAGGGAGTGCGTTGACC GGTGGGTTGACGAAGGCCGGCTGAGTTGCCCTCTTTGTAGGTCTAATCTTTATCCAAATAAGTTGGGATTGGCCCAGCTACGCGGCTGCTCCTCCTCCTC CTCTCCTGTGTCGACGTCATCTTTAGATCATTTTCATGAGGAATAA
AA sequence Show only first row Show all	>Lus10008283 pacid=23173721 polypeptide=Lus10008283 locus=Lus10008283.g ID=Lus10008283.BGIv1.0 annot-version=v1.0 MKFRCDFVSAKIPNWVDSALSCIRWILVEALSLVGLMKSPAASEYSPEESSSDTTHFLLLDGFYLMSVPVSDLTRFIKRSLPVISYSSFLIPDGGEETAA AGMCTVCMEAISGEEKIRELCNCRHVFHRECVDRWVDEGRLSCPLCRSNLYPNKLGLAQLRGCSSSSSPVSTSSLDHFHEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Lus10008283 [exp]	0	1
AT2G29670			Tetratricopeptide repeat (TPR)...		Lus10018221 [exp]	5.1	0.7352
AT5G10760			Eukaryotic aspartyl protease f...		Lus10026906 [exp]	12.5	0.7537
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10029054 [exp]	24.6	0.6986
AT1G44350		ILL6	IAA-leucine resistant (ILR)-li...		Lus10018169 [exp]	65.5	0.6550
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10028852 [exp]	70.9	0.6601
AT2G01860		EMB975	EMBRYO DEFECTIVE 975, Tetratri...		Lus10009057 [exp]	75.2	0.6630
AT5G05340			Peroxidase superfamily protein...		Lus10009932 [exp]	81.3	0.6385
AT3G50910			unknown protein		Lus10025996 [exp]	100.7	0.6515
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Lus10041300 [exp]	124.9	0.6040
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Lus10032930 [exp]	130.0	0.6344

Compare expression of checked genes

Lus10008283 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.