Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35580 407 / 7e-137 NAC NTL9, CBNAC NAC transcription factor-like 9 (.1.2.3) AT1G33060 388 / 8e-128 NAC ANAC014 NAC 014 (.1.2) AT3G49530 260 / 2e-80 NAC NTL6, ANAC062 NTM1 \(NAC WITH TRANSMEMBRANE MOTIF 1\)-LIKE 6, NAC domain containing protein 62 (.1) AT5G24590 245 / 6e-75 NAC TIP, ANAC091 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) AT3G17730 194 / 6e-58 NAC ANAC057 NAC domain containing protein 57 (.1) AT1G65910 203 / 1e-57 NAC ANAC028 NAC domain containing protein 28 (.1) AT5G17260 198 / 6e-57 NAC ANAC086 NAC domain containing protein 86 (.1) AT4G17980 187 / 2e-55 NAC ANAC071 NAC domain containing protein 71 (.1) AT3G03200 192 / 1e-54 NAC ANAC045 NAC domain containing protein 45 (.1) AT5G46590 186 / 2e-54 NAC ANAC096 NAC domain containing protein 96 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033251 [exp] 1046 / 0 AT4G35580 410 / 5e-138 NAC transcription factor-like 9 (.1.2.3) Lus10010148 [exp] 497 / 3e-171 AT4G35580 325 / 9e-105 NAC transcription factor-like 9 (.1.2.3) Lus10017353 [exp] 439 / 1e-149 AT4G35580 245 / 7e-75 NAC transcription factor-like 9 (.1.2.3) Lus10032919 [exp] 283 / 2e-88 AT5G24590 314 / 7e-102 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) Lus10015587 [exp] 275 / 4e-85 AT5G24590 306 / 9e-99 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) Lus10042284 [exp] 199 / 4e-59 AT3G17730 348 / 1e-121 NAC domain containing protein 57 (.1) Lus10026373 [exp] 196 / 3e-58 AT3G17730 348 / 2e-121 NAC domain containing protein 57 (.1) Lus10007377 [exp] 204 / 1e-57 AT1G65910 431 / 7e-143 NAC domain containing protein 28 (.1) Lus10020794 [exp] 203 / 3e-56 AT5G10360 449 / 8e-153 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G149300 [exp] 529 / 0 AT1G33060 387 / 2e-125 NAC 014 (.1.2) Potri.001G452700 [exp] 508 / 1e-174 AT1G33060 415 / 7e-137 NAC 014 (.1.2) Potri.012G007500 [exp] 295 / 4e-92 AT5G24590 306 / 4e-98 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) Potri.015G004100 [exp] 291 / 6e-91 AT3G49530 309 / 5e-99 NTM1 \(NAC WITH TRANSMEMBRANE MOTIF 1\)-LIKE 6, NAC domain containing protein 62 (.1) Potri.010G174600 [exp] 196 / 1e-57 AT1G54330 290 / 2e-97 NAC domain containing protein 20 (.1) Potri.008G081500 [exp] 191 / 1e-55 AT1G54330 316 / 1e-107 NAC domain containing protein 20 (.1) Potri.015G030200 [exp] 187 / 1e-55 AT3G17730 374 / 6e-133 NAC domain containing protein 57 (.1) Potri.017G139500 [exp] 194 / 3e-54 AT1G65910 461 / 1e-154 NAC domain containing protein 28 (.1) Potri.003G089800 [exp] 187 / 7e-54 AT4G17980 319 / 6e-109 NAC domain containing protein 71 (.1) Potri.012G038100 [exp] 184 / 7e-54 AT3G17730 339 / 4e-118 NAC domain containing protein 57 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10008285 pacid=23173737 polypeptide=Lus10008285 locus=Lus10008285.g ID=Lus10008285.BGIv1.0 annot-version=v1.0 ATGGCTGTGATATCGATGCAATCGCTGCCTCTGGGCTTCAGATTCAGGCCTACTGACGAGGAACTCATCAATCACTACCTCAGGTTGAAGATCAACGGCC GCGATTCCGAGGTCGAGGTCATCCCTGAAATCGATGTCTGCAAATGGGAGCCTTGGGATCTTCCTGGTCTATCCGTGATCAAGAATGATGATCCGGAGTG GTTCTTCTTCTGCCCTCGTGACCGAAAGTACCCTAATGGTCATAGGTCTAACAGGGCTACTGAAGCTGGATACTGGAAAGCTACTGGCAAAGACCGTACC ATTAGGTCCAGGAGGCCTGGTTCTACTCCTGTTTCTATCGGCATGAAGAAGACGTTGGTCTTCTACAGAGGTCGTGCTCCCAAGGGTGAGCGAAGTAACT GGATTATGCACGAGTATCGTCCTACCCTCGAAGATCTTGATGGCACTGGACCAGGCCAGGCTCCGTTTGTCCTCTTTCGGTTGTTCCGGAAGCCGGAGGA GAAGGTTGATGTGGTGAAGTATGATGAAGTTGAGCAAACCGGTTACTCTCCAACCACTACCAAGTCCTCCCCTGATGAAGCAACGTCAGATTTAGTTCAG GAGACTGCTACATCCAGTATGCGAGGTGGAAAACCATCGGATACTTTGTTAGACTGCATGACGCCTACTACTGCTTTGGTTCCTGCCGATAGCAGCTGCA ATAGCCATATGAATTCAGATGTGGAGGATCATGTCACGGAATTGACTGTTGAAGAGGCAAATGCACTGGTGGATGGGAGTTCCCATCCTTATGAGTTCAC ATCTGGTGAAGTTGATTACAAAATGTTCTCCCCAATGCAGCCGCACCCTTATGGAGATCTGGGGCTAAATTTCGACTCTCATTATGACAATGACTTTGGT AATGACCTTAATGGATTCCAATTCCAGGATGGCACAAGTGAACAAGATGTATCCCTCACAGAGCTGTTGGATGAGGTGTTCCATAACGATGATTTGTCTT TTGAAGAAGCCTCCAGTGACAAAAATCTTGGTTTACTTCCAGAAAGTTTCCATGTAAGAAACTGGGAACTACACAACAATATGGATGCCAAAATGGCTCA AGCACAGACAAGATTCCTTAACGCAGAAGCTGGAAGCAGAAATATCAATGACAACAGAAATAGTTTTGTTATGCAAGCAACCCATCCTGCCAACTATGCA ACAAACACATCCTTTGGAATGTCCCACCCCGTGGAGAACTCTGTAAGCATTGACAATGATGGCGGAACTGGAATCAAGATTAGAACACGGCAACCTCGAG CACGAGCTTCAGACAACTTTGTTGGTCAAGGTACTGCTGCAAGGAGGCTACGGTTACAATCAAGACTAGGAGACACAAGCTGCGTAGAGGATGAAGATGA AGTGCAATCAACTCTAACCGAGGGCCAAGACGGTAAAGAAGGCGATGAGGCAATTCGTGATGATCAGATGAAAGAAGGCCCGGTCGTCAAGCAGAACATC AGGCTGAGGTTAAAAGGGAATGATAAAAGCGAACATGGAGGTTCGATTTGTCAAAGTTATGAGAAGAATGGTTCTGCTATTAGGTCAAGATGGGTGATTG GTTTATCAGGAGTTGTGTTTCTGGTGGCCGGTATGGTTGGAATATGCAGATGCCTGTGGTCGTGA
AA sequence Show only first row Show all	>Lus10008285 pacid=23173737 polypeptide=Lus10008285 locus=Lus10008285.g ID=Lus10008285.BGIv1.0 annot-version=v1.0 MAVISMQSLPLGFRFRPTDEELINHYLRLKINGRDSEVEVIPEIDVCKWEPWDLPGLSVIKNDDPEWFFFCPRDRKYPNGHRSNRATEAGYWKATGKDRT IRSRRPGSTPVSIGMKKTLVFYRGRAPKGERSNWIMHEYRPTLEDLDGTGPGQAPFVLFRLFRKPEEKVDVVKYDEVEQTGYSPTTTKSSPDEATSDLVQ ETATSSMRGGKPSDTLLDCMTPTTALVPADSSCNSHMNSDVEDHVTELTVEEANALVDGSSHPYEFTSGEVDYKMFSPMQPHPYGDLGLNFDSHYDNDFG NDLNGFQFQDGTSEQDVSLTELLDEVFHNDDLSFEEASSDKNLGLLPESFHVRNWELHNNMDAKMAQAQTRFLNAEAGSRNINDNRNSFVMQATHPANYA TNTSFGMSHPVENSVSIDNDGGTGIKIRTRQPRARASDNFVGQGTAARRLRLQSRLGDTSCVEDEDEVQSTLTEGQDGKEGDEAIRDDQMKEGPVVKQNI RLRLKGNDKSEHGGSICQSYEKNGSAIRSRWVIGLSGVVFLVAGMVGICRCLWS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10008285 [exp]	0	1
AT2G21520			Sec14p-like phosphatidylinosit...		Lus10026356 [exp]	1.0	0.9512
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10033251 [exp]	2.8	0.9436
AT2G31130			unknown protein		Lus10017672 [exp]	3.5	0.9388
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Lus10003567 [exp]	4.2	0.9397
AT2G30880			Pleckstrin homology (PH) domai...		Lus10020739 [exp]	5.5	0.9348
AT1G32230		ATP8, CEO1, RCD...	RADICAL-INDUCED CELL DEATH1, A...		Lus10030991 [exp]	8.5	0.9304
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Lus10001973 [exp]	9.9	0.9233
AT1G48635		PEX3-2, PEX3	PEROXIN 3-2, peroxin 3 (.1.2)		Lus10041998 [exp]	10.0	0.9065
AT5G54730		ATATG18F	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10035835 [exp]	10.2	0.9272
AT5G19280	FHA	RAG1, KAPP	ROOT ATTENUATED GROWTH 1, kina...		Lus10041216 [exp]	11.5	0.9189

Compare expression of checked genes

Lus10008285 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.