Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45530 225 / 7e-74 RING/U-box superfamily protein (.1) AT2G37950 57 / 1e-09 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G05830 54 / 2e-08 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G59000 53 / 3e-08 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G34200 50 / 5e-07 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G03180 50 / 1e-06 RING/U-box superfamily protein (.1.2) AT5G01070 48 / 1e-06 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT1G02610 48 / 1e-06 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G63780 49 / 2e-06 SHA1 shoot apical meristem arrest 1, RING/FYVE/PHD zinc finger superfamily protein (.1) AT3G06330 47 / 9e-06 RING/U-box superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033252 [exp] 385 / 2e-136 AT2G45530 258 / 7e-87 RING/U-box superfamily protein (.1) Lus10000211 [exp] 79 / 4e-19 AT2G45530 45 / 3e-07 RING/U-box superfamily protein (.1) Lus10028249 [exp] 69 / 9e-14 AT5G05830 184 / 8e-59 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10040240 [exp] 66 / 7e-13 AT5G05830 187 / 4e-60 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10027744 [exp] 61 / 6e-11 AT5G05830 162 / 8e-50 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10035549 [exp] 61 / 1e-10 AT5G05830 157 / 4e-48 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10016451 [exp] 58 / 5e-10 AT5G05830 164 / 1e-51 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10040716 [exp] 58 / 6e-10 AT5G05830 159 / 1e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10021113 [exp] 57 / 1e-09 AT5G05830 167 / 7e-53 RING/FYVE/PHD zinc finger superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G452800 [exp] 244 / 4e-81 AT2G45530 259 / 3e-87 RING/U-box superfamily protein (.1) Potri.011G149200 [exp] 243 / 7e-81 AT2G45530 236 / 3e-78 RING/U-box superfamily protein (.1) Potri.010G195100 [exp] 58 / 6e-10 AT5G05830 206 / 9e-68 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.006G094000 [exp] 58 / 8e-10 AT5G05830 192 / 8e-62 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.016G105900 [exp] 57 / 1e-09 AT5G05830 191 / 2e-61 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.009G039700 [exp] 57 / 1e-09 AT5G05830 159 / 2e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.008G062600 [exp] 55 / 8e-09 AT5G05830 211 / 7e-70 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.001G246700 [exp] 53 / 2e-08 AT5G59000 159 / 2e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.007G098900 [exp] 54 / 4e-08 AT5G08750 411 / 2e-143 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3) Potri.005G070100 [exp] 54 / 5e-08 AT5G08750 414 / 1e-144 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10008286 pacid=23173726 polypeptide=Lus10008286 locus=Lus10008286.g ID=Lus10008286.BGIv1.0 annot-version=v1.0 ATGATAGGTGGTCAGATGCAGATGCATGAGCCTAATAAGGTTGGCGATGGGAATCCCTCTCATGAAAATAATTTGTCTATACATCCTACTCAAGAAGACC TTGACTTGGAGAAGCAGCAGCATGTTGACCACCTTCAAGTCGCCGCCGCCAAAGAAGAAGAAGATCATGCCTCCACTGCCACTTCTGTGCCTTGTGTGGT TGTTGTTGTTGCTAATGACAATTCTCCTCCCCTTCCTTCCAATTTACCAGCTCCTGCTTCACCCACTAAGCCATCTCTCTCAAGGGTTCCGAGTTCTCAT GACAACTGCAGAGTATGTCAGCAGGACAAAGAAGAAGTGCTGATAGATCTTGGGTGCAAATGCAAAGGTGGTCTTGCCAAATCCCACCGCTCCTGTATAG ATGCTTGGTTCTTGACTAGAGGGTCAAATAAGTGTGAGATATGCCAAGATATCGCTGTAAATGTGTCTCCTCCGGAATCTCAACCAAGTACAAACTACTG GGTGTGGAGGCTTGATCCGACATACAGACCTCAAGACCAGCAAAGGGGTTGTTCTAGTCCTCTTTGGGTGGCATTCTCGATCCTGATCGGGGGACTCTTG TTGGACGTGTTGATCTCAATCACCCTGGGGATTTCCGCTCTACCAGTCAACATAATTATCGGTGTGATCGTTGTGATTGGACTAGGAACTGCACTGAGGT TGGCTCTGGAGTTCTGCAACGAATGGAGTTCGAGGAGAGGAGTTCACCGGGTGGATGCGAATGTTAATCTCGGGTATCATCCCGCATTATAG
AA sequence Show only first row Show all	>Lus10008286 pacid=23173726 polypeptide=Lus10008286 locus=Lus10008286.g ID=Lus10008286.BGIv1.0 annot-version=v1.0 MIGGQMQMHEPNKVGDGNPSHENNLSIHPTQEDLDLEKQQHVDHLQVAAAKEEEDHASTATSVPCVVVVVANDNSPPLPSNLPAPASPTKPSLSRVPSSH DNCRVCQQDKEEVLIDLGCKCKGGLAKSHRSCIDAWFLTRGSNKCEICQDIAVNVSPPESQPSTNYWVWRLDPTYRPQDQQRGCSSPLWVAFSILIGGLL LDVLISITLGISALPVNIIIGVIVVIGLGTALRLALEFCNEWSSRRGVHRVDANVNLGYHPAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45530			RING/U-box superfamily protein...		Lus10008286 [exp]	0	1
AT5G01260			Carbohydrate-binding-like fold...		Lus10002495 [exp]	1.0	0.9514
AT4G10170			SNARE-like superfamily protein...		Lus10002944 [exp]	1.7	0.9463
AT4G03020			transducin family protein / WD...		Lus10042682 [exp]	2.0	0.9468
AT1G50440			RING/FYVE/PHD zinc finger supe...		Lus10033381 [exp]	2.8	0.9385
AT5G46550			DNA-binding bromodomain-contai...		Lus10011989 [exp]	5.2	0.9183
AT5G47860			Protein of unknown function (D...		Lus10008591 [exp]	6.0	0.9146
AT3G27820		ATMDAR4	monodehydroascorbate reductase...		Lus10013079 [exp]	6.4	0.8979
AT1G55280			Lipase/lipooxygenase, PLAT/LH2...		Lus10039181 [exp]	7.2	0.9141
AT1G63900		DAL1	DIAP1-like protein 1, E3 Ubiqu...		Lus10027994 [exp]	10.0	0.9056
AT1G60995			unknown protein		Lus10014638 [exp]	10.0	0.9162

Compare expression of checked genes

Lus10008286 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.