Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10390 569 / 0 Nucleoporin autopeptidase (.1.2) AT1G59660 468 / 1e-148 Nucleoporin autopeptidase (.1) AT1G80680 142 / 3e-34 NUP96, SAR3, MOS3, PRE PRECOCIOUS, MODIFIER OF SNC1,3, SUPPRESSOR OF AUXIN RESISTANCE 3 (.1) AT1G63540 53 / 1e-06 hydroxyproline-rich glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033254 [exp] 1539 / 0 AT1G10390 1023 / 0.0 Nucleoporin autopeptidase (.1.2) Lus10033256 [exp] 229 / 5e-64 AT1G10390 247 / 8e-71 Nucleoporin autopeptidase (.1.2) Lus10040555 [exp] 134 / 9e-32 AT1G80680 605 / 0.0 PRECOCIOUS, MODIFIER OF SNC1,3, SUPPRESSOR OF AUXIN RESISTANCE 3 (.1) Lus10007993 [exp] 134 / 2e-31 AT1G80680 1280 / 0.0 PRECOCIOUS, MODIFIER OF SNC1,3, SUPPRESSOR OF AUXIN RESISTANCE 3 (.1) Lus10015795 [exp] 53 / 7e-07 AT1G24310 404 / 2e-140 unknown protein Lus10037010 [exp] 53 / 1e-06 AT1G24310 478 / 2e-169 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G148800 [exp] 846 / 0 AT1G10390 606 / 0.0 Nucleoporin autopeptidase (.1.2) Potri.001G453200 [exp] 629 / 0 AT1G10390 684 / 0.0 Nucleoporin autopeptidase (.1.2) Potri.003G180100 [exp] 172 / 9e-44 AT1G80680 1272 / 0.0 PRECOCIOUS, MODIFIER OF SNC1,3, SUPPRESSOR OF AUXIN RESISTANCE 3 (.1) Potri.010G059100 [exp] 50 / 4e-06 AT1G24310 448 / 1e-157 unknown protein Potri.007G036600 [exp] 45 / 0.0003 AT4G37130 424 / 4e-144 hydroxyproline-rich glycoprotein family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0661 [flax] [poplar] Gain PF04096 [flax] [poplar] Nucleoporin2 Nucleoporin autopeptidase
Representative CDS sequence Show only first row Show all	>Lus10008288 pacid=23173695 polypeptide=Lus10008288 locus=Lus10008288.g ID=Lus10008288.BGIv1.0 annot-version=v1.0 ATGTTTGGCTCTCCGAATCCTTTTGGACAGACACCTAGTAACCCTTTTGGGTCATCAGGATTCGGCCAGACAGCTGCTCCAGCCAATAACCCTTTTGCAT CTAAACCTTTTGGGAGTCCAACCCCTTTTGGTTCCCAAACGGGAAGCTCCTTATTTGGGGGAACTTCAACAGGTATGTTTGGTGCACCGCAAGCTTCTTC ACCTTTCCCATCTACAACAACATTTGGGGCCTCGTCATCACCTGCTTTTGGAAGCTCAATGCCTGCTTTTGGAGCATCTAGCACTCCTGCTTTCAATAGT TCCCCCTCAACCTTTGGTGGGTCATCTGCCTTCGGTCAAAAGCCTGCTTTTGGAGGTTTTGGGTCCAGTACTACTCCGACTCCGTTTGGAAGCACAAACC AGCAATCCCAGCCTGCTTTTGGTAGCAGTTTGTTTGGTACATCAACTACATTTGGTGCTGCATCTCAGTCTGGTTTCGGTGCTACTAGCACGCCTGCATT TGGTACAACAAGCACCCCTGCCTTTGGTTCCACAAGCACCCCAGCATTTGGCGCTGCAAGTACTCCGTCATTTGGTGCGACAAGCACCCCAGCATTTGGA TCGACAGCAAGCCCAGCCTTTGGTAGCACAGGATCAGCCTTTGGTGTGTCTAATACCCCAGCTTTTGGAACATCAAATACTTCTGTTTTTGGATCATCTA CTCCATCTTTCGGTGCTGCAAGCACTCAAGCATTTGGAGCTGCAAGCTCTCCTGCATTTGGGGCTTCAAATACTCAAACTTTTGGGGCATCTAGTTCTCC ATCATTTAGCTTTGCATCAACTTCTGCATTTGGTCAGTCAACTTCTGCGTTTGGAAGCAGCCCTTTTGGAGCTCAGAGTTCTGCATTTGGTGCCCAGGCT ACAACACCAACATTTGGAAGCTCAGGCTTTGGCCAAACACAATTTGGAGCACAGAAAGGTGGAAGTCGAGCTGTACCGTATACAACTACTGCTGACACAG ACAGCACTGGTCAAGGGGGGCAGCCGGGGAAGTTGGAGTCAATATCAGCCATGCCTGCCTATAAAGAAAAGAGCCATGAGGAGCTGAGATGGGAGGATTA TCAATTGGGAGATAAAGGTGGACCTCAGGCCTCAGGTCAACCTTCTGCGGGAATCAATTTTAGTGCACCAGCAGCACAGTCAAACCCATTTGGTTCTTCA TCTGCATTTCCTCAATCATCTGCGAATCCCTTTTCTGCTTCGACCCCATCCAATCCATTTGCTCCAAAGCCTTTTGGACAATCGCCAACCTCAACTTTCA ATTCTTCCCCTTTTGGAACTTCAACGAATGCCAACCCTTTCCAGTCGACATCATTTCCTTCCACATCAACTGGTGGATTTGGCACCACTTCTCCATCTTT GTTTGGCACATCAAGCACATCAACTTTTGGTTCCACGCCTTCCTTGTTTTCTTCTACTGCCCAAGGAACAACTTCCACATTTAATCCCAGCATGGGCTTC CCCAGCAGTTCTTCTCCGTTTCAGTCGACTACTCCTTCACTTGGACAAACCTCTTTATTCCCACAAACTGCCTCTTCCATTGGACTGAATTCTGCCTCTC CTTTTGGCCAGTCAAACATTTTCAATACACCGGCGACTTCACAAAGTGGTGGCCTTTTCTCAAACACATCTTTATTTCCTTCCTCTAACACTGGAGGGTT TGGTCAGACGTCGGCCTCCACCGCAGCACCTTTTCAACAGCCTCAACCTAGCTTTATGAATTTTGGTACAGCCCAAGCAGGTGGTACAAGTGGCTTTACT AGTGCATTTGGTCAGAACATTTTGGGACAGCAGCCTGCCATACAGAATTCTGTCGGTGTACTTCAAGTACCTGTGACCAATCCTTTTGGTACACTCCCAG TAATGCCACAAATTTCAATAGCGCGAGCTGGAACTACACCTTCTGTTCAGTACGGGATCTCTAGCTTGCCTGTGGTTGACAAACCTGCACCTGTAAGAGT ATCCTCCTTATTGACCTCTCGGCACCTACTACAAAGGCGGATGAAGATGCCTGCCAGGAAATATTACCCCAAACATGATGGTCCCAAGGTACCATTTTTC AGCGATGAGGAAGAATCACCAAGCACGCCAAAAGCAGATGCTCTCTTCGTTCCCAGGGAGAACCCAAGAGCTCTAGTGATTCACCCTGTTGACCAGTGGC CGTTAAGAGCTAATGCAGACAAAGGATCTCCTATTAAGGATGTAAATCAGAATGGCAAGTTTCTGACTCCTCCCTCCTCTCTTCCTCTCTCTGACAAATA TCCATATCCAGGGAAAGTCTTAGAAGCGATGAATGGAGAGGGTGTTCCTTCCGTAAATGGTACCAAGCCCAACGGCAAAGCTAAGAACCCGGCTGAAAAT GGTATTGGCAGCAAGGAAGTGAAACAGGGCCAGAAGCTCAACAACGGAGTTCACGGAGATCATTCCAGTCAGAAAGATGAATCGTACATGAGATTTAGTG GTCACAGAGCTGGAGAAGCGGCAATTGTTTACGAGCATGGGGCAGACATTGAGGCACTAATGCCAAAGCTACGTCGTGCGGATTACTATACAGAGCCCCG GATTCAAGAACTGGCGGCCAAGGAAAGGGCAGAACCCGGATTTTGCCGGCGTGTGAAGGACTTTGTGGTTGGACGACGAGGGTTTGGAAGCATCAAGTTT TTGGATGAGACAGATGTGAGAAGGCTTGACCTGGATTCTGTGGTTCATTTCAACACCCGGGAAGTGATCGTCTATATGGATGACCATCACGAGAAACCCC CGATTGGACAAGGTCTCAATAAGCCTGCTGAGGTAACTCTTCTCAACATCAAGTGCGTTGATAAAAAGACCAAGAAGGAATTTACAGAAGGGAAGAGGGT GGAGAGGTACAAGGAAACTCTGAAGAAGAAGACAGAAGAGCAAGATGCCGAGTTTGTCTCGTACGATGCAGTGAAAGGAGAATGGAAGTTCCGGGTTAAG CATTTCAGCAGCTACAAGCTTCTCGAGGAAGAGCAAGAGCAAGAGGAAGAAGATTGA
AA sequence Show only first row Show all	>Lus10008288 pacid=23173695 polypeptide=Lus10008288 locus=Lus10008288.g ID=Lus10008288.BGIv1.0 annot-version=v1.0 MFGSPNPFGQTPSNPFGSSGFGQTAAPANNPFASKPFGSPTPFGSQTGSSLFGGTSTGMFGAPQASSPFPSTTTFGASSSPAFGSSMPAFGASSTPAFNS SPSTFGGSSAFGQKPAFGGFGSSTTPTPFGSTNQQSQPAFGSSLFGTSTTFGAASQSGFGATSTPAFGTTSTPAFGSTSTPAFGAASTPSFGATSTPAFG STASPAFGSTGSAFGVSNTPAFGTSNTSVFGSSTPSFGAASTQAFGAASSPAFGASNTQTFGASSSPSFSFASTSAFGQSTSAFGSSPFGAQSSAFGAQA TTPTFGSSGFGQTQFGAQKGGSRAVPYTTTADTDSTGQGGQPGKLESISAMPAYKEKSHEELRWEDYQLGDKGGPQASGQPSAGINFSAPAAQSNPFGSS SAFPQSSANPFSASTPSNPFAPKPFGQSPTSTFNSSPFGTSTNANPFQSTSFPSTSTGGFGTTSPSLFGTSSTSTFGSTPSLFSSTAQGTTSTFNPSMGF PSSSSPFQSTTPSLGQTSLFPQTASSIGLNSASPFGQSNIFNTPATSQSGGLFSNTSLFPSSNTGGFGQTSASTAAPFQQPQPSFMNFGTAQAGGTSGFT SAFGQNILGQQPAIQNSVGVLQVPVTNPFGTLPVMPQISIARAGTTPSVQYGISSLPVVDKPAPVRVSSLLTSRHLLQRRMKMPARKYYPKHDGPKVPFF SDEEESPSTPKADALFVPRENPRALVIHPVDQWPLRANADKGSPIKDVNQNGKFLTPPSSLPLSDKYPYPGKVLEAMNGEGVPSVNGTKPNGKAKNPAEN GIGSKEVKQGQKLNNGVHGDHSSQKDESYMRFSGHRAGEAAIVYEHGADIEALMPKLRRADYYTEPRIQELAAKERAEPGFCRRVKDFVVGRRGFGSIKF LDETDVRRLDLDSVVHFNTREVIVYMDDHHEKPPIGQGLNKPAEVTLLNIKCVDKKTKKEFTEGKRVERYKETLKKKTEEQDAEFVSYDAVKGEWKFRVK HFSSYKLLEEEQEQEEED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10390			Nucleoporin autopeptidase (.1....		Lus10008288 [exp]	0	1
AT4G24560		UBP16	ubiquitin-specific protease 16...		Lus10015893 [exp]	2.8	0.8362
AT3G06330			RING/U-box superfamily protein...		Lus10033985 [exp]	2.8	0.8306
AT3G13060		ECT5	evolutionarily conserved C-ter...		Lus10033335 [exp]	3.5	0.8617
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Lus10023353 [exp]	3.7	0.8688
AT1G34780		ATAPRL4	APR-like 4 (.1.2)		Lus10020928 [exp]	4.2	0.8225
AT4G32600			RING/U-box superfamily protein...		Lus10017750 [exp]	4.7	0.8162
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10027496 [exp]	8.3	0.8421
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Lus10009891 [exp]	8.7	0.8098
AT4G26750		EXT-like	extensin-like, hydroxyproline-...		Lus10012781 [exp]	8.8	0.8146
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10031798 [exp]	10.5	0.7941

Compare expression of checked genes

Lus10008288 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.